Aliases hsa_circ_0002138 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr15:63824845-63855207:+
CircRNA type . Gene ID ENSG00000259248.1;ENSG00000140455.12
Gene Name USP3-AS1;USP3 Detection pipeline .
Sample Type Hs68_RNase; Hs68_control; Nhek; K562; Huvec; Hepg2; Helas3; Gm12878; Bj; Ag04450; A549; Sknshra; Mcf7
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases HSA_CIRCpedia_15046 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr15:63824845-63855207
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type Liver_N14;Liver_N11;Liver_T13;PA1;Liver_T3;GM12878;Forebrain;Liver_N7;SH-SY5Y_D4_exp1;BJ;Stomach;SH-SY5Y_D0_exp1;Occipital;Temporal;AG04450;H9;SH-SY5Y_D0_exp2;HeLa_S3;Cortex;A549;Liver_T14;Liver_T10;Liver_N6;Liver_N13;Liver_T15;SH-SY5Y_D4_exp2;Diencephalon;Liver_T7;Liver_N10;Liver_T8;Liver_N3;Thyroid;Liver_N15;Parietal;HepG2;Heart;Liver_T12;K562;Liver_N12;Liver;Liver_T6;Cerebellum;Liver_T11;Hs68;Liver_N20;Liver_T21;Liver_T19;Liver_T22;Liver_N22;Liver_N18;Liver_T18;Liver_N17;Liver_T17;Liver_N21
Method for Estimation Ribo-;RNaseR;poly(A)-
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases circ_003204 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr15:63824845-63855207:+
CircRNA type n/a Gene ID ENSG00000259248.1;ENSG00000140455.12
Gene Name USP3-AS1;USP3 Detection pipeline Find_circ
Sample Type colorectal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases hsa_circRNA_101546 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr15:63824845-63855207:+
CircRNA type exonic Gene ID ENSG00000259248.1;ENSG00000140455.12
Gene Name USP3-AS1;USP3 Detection pipeline n/a
Sample Type Esophageal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases circ3204/hsa_circ_0002138 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr15:63824845-63855207:+
CircRNA type N/A Gene ID ENSG00000259248.1;ENSG00000140455.12
Gene Name USP3-AS1;USP3 Detection pipeline N/A
Sample Type Colorectal cancer
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer TTAGCCCAGAGTCCTTATTTTATG
Reverse Primer TGGACCGGCACACTAAAGT
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
336 GGTGGACGCTGTGTTGAAAT GCTATGGACTCTGCCTGGAT 50 55 59.048 58.945 19 354 20 20
241 GGGCACTGTCCTTTCCTCTT GAAGTGCTGGCAGAGAGGTA 55 55 59.598 59.102 60 300 20 20
349 TTTAGATGGGTGGACGCTGT TAGCTGCTATGGACTCTGCC 50 55 59.019 58.956 11 359 20 20
265 ACTAATCTGAGGGCACTGTCC GAACGAGCCCTTTGGAAGTG 52.381 55 59.166 59.125 50 314 21 20
285 TGGACGCTGTGTTGAAATTGT CTTTGGAAGTGCTGGCAGAG 42.857 55 58.979 59.12 21 305 21 20
195 CCTCTTTTGCAGGTCTTTGGT CCGGGGTTCCTTTCATGAGA 47.619 55 58.689 59.382 74 268 21 20
181 TGTCCTTTCCTCTTTTGCAGG ACTGGGAAGAAGGAGTGGTT 47.619 50 58.414 58.179 66 246 21 20
225 CCTTTCCTCTTTTGCAGGTCT TGGCAGAGAGGTAATGGGAA 47.619 50 58.131 58.035 69 293 21 20
308 ATGGGTGGACGCTGTGTT GGTCTCTAGGAACGAGCCC 55.556 63.158 59.164 58.883 16 323 18 19
272 CGCTGTGTTGAAATTGTAGCC TGCTGGCAGAGAGGTAATGG 47.619 55 58.415 59.457 25 296 21 20
230 CACTGTCCTTTCCTCTTTTGC GGCAGAGAGGTAATGGGAAGTA 47.619 50 57.367 58.961 63 292 21 22
158 CTCTTTTGCAGGTCTTTGGTAGA GTGGTTTACTCTTCAGGCAGA 43.478 47.619 58.611 57.597 75 232 23 21
249 AGGGCACTGTCCTTTCCT CCCTTTGGAAGTGCTGGC 55.556 61.111 57.661 58.63 59 307 18 18
220 GCTGTGTTGAAATTGTAGCCTCT CTGGGAAGAAGGAGTGGTTTAC 43.478 50 59.496 58.324 26 245 23 22
223 TGTTGAAATTGTAGCCTCTCACT GAGAAAACTGGGAAGAAGGAGTG 39.13 47.826 58.027 58.931 30 252 23 23
203 TTTAGATGGGTGGACGCTGT GTTGGACCGGCACACTAAAG 50 55 59.019 59.128 11 213 20 20
166 GGGCACTGTCCTTTCCTCTT CCAAGGGCTTTTGTTGGACC 55 55 59.598 59.607 60 225 20 20
190 GGTGGACGCTGTGTTGAAAT ACCGGCACACTAAAGTTTGG 50 50 59.048 58.685 19 208 20 20
196 TGGACGCTGTGTTGAAATTGT TTTGTTGGACCGGCACACTA 42.857 50 58.979 59.819 21 216 21 20
221 ACTAATCTGAGGGCACTGTCC TGTCACCTACCTTCCACAGT 52.381 50 59.166 57.903 50 270 21 20
145 CCTCTTTTGCAGGTCTTTGGT CTTTTGTTGGACCGGCACA 47.619 52.632 58.689 58.889 74 218 21 19
182 CGCTGTGTTGAAATTGTAGCC CGGCACACTAAAGTTTGGCAT 47.619 47.619 58.415 59.731 25 206 21 21
155 TGTCCTTTCCTCTTTTGCAGG GGCTTTTGTTGGACCGGC 47.619 61.111 58.414 59.661 66 220 21 18
207 CCTTTCCTCTTTTGCAGGTCT AAGTATGTCACCTACCTTCCAC 47.619 45.455 58.131 57.179 69 275 21 22
166 GGGCACTGTCCTTTCCTCTT CCAAGGGCTTTTGTTGGACC 55 55 59.598 59.607 60 225 20 20
190 GGTGGACGCTGTGTTGAAAT ACCGGCACACTAAAGTTTGG 50 50 59.048 58.685 19 208 20 20
203 TTTAGATGGGTGGACGCTGT GTTGGACCGGCACACTAAAG 50 55 59.019 59.128 11 213 20 20
196 TGGACGCTGTGTTGAAATTGT TTTGTTGGACCGGCACACTA 42.857 50 58.979 59.819 21 216 21 20
221 ACTAATCTGAGGGCACTGTCC TGTCACCTACCTTCCACAGT 52.381 50 59.166 57.903 50 270 21 20
145 CCTCTTTTGCAGGTCTTTGGT CTTTTGTTGGACCGGCACA 47.619 52.632 58.689 58.889 74 218 21 19
182 CGCTGTGTTGAAATTGTAGCC CGGCACACTAAAGTTTGGCAT 47.619 47.619 58.415 59.731 25 206 21 21
155 TGTCCTTTCCTCTTTTGCAGG GGCTTTTGTTGGACCGGC 47.619 61.111 58.414 59.661 66 220 21 18
207 CCTTTCCTCTTTTGCAGGTCT AAGTATGTCACCTACCTTCCAC 47.619 45.455 58.131 57.179 69 275 21 22
203 TTTAGATGGGTGGACGCTGT GTTGGACCGGCACACTAAAG 50 55 59.019 59.128 11 213 20 20
166 GGGCACTGTCCTTTCCTCTT CCAAGGGCTTTTGTTGGACC 55 55 59.598 59.607 60 225 20 20
190 GGTGGACGCTGTGTTGAAAT ACCGGCACACTAAAGTTTGG 50 50 59.048 58.685 19 208 20 20
196 TGGACGCTGTGTTGAAATTGT TTTGTTGGACCGGCACACTA 42.857 50 58.979 59.819 21 216 21 20
221 ACTAATCTGAGGGCACTGTCC TGTCACCTACCTTCCACAGT 52.381 50 59.166 57.903 50 270 21 20
145 CCTCTTTTGCAGGTCTTTGGT CTTTTGTTGGACCGGCACA 47.619 52.632 58.689 58.889 74 218 21 19
155 TGTCCTTTCCTCTTTTGCAGG GGCTTTTGTTGGACCGGC 47.619 61.111 58.414 59.661 66 220 21 18
207 CCTTTCCTCTTTTGCAGGTCT AAGTATGTCACCTACCTTCCAC 47.619 45.455 58.131 57.179 69 275 21 22
182 CGCTGTGTTGAAATTGTAGCC CGGCACACTAAAGTTTGGCAT 47.619 47.619 58.415 59.731 25 206 21 21