Aliases hsa_circ_0005941 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr16:53907697-53922863:+
CircRNA type . Gene ID ENSG00000140718.20
Gene Name FTO Detection pipeline .
Sample Type Hs68_RNase; Hs68_control; Nhek; K562; Hepg2; Helas3; H1hesc; Gm12878; Bj; Ag04450; A549; Sknshra
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases HSA_CIRCpedia_17902 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr16:53907697-53922863
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type Liver_N15;H9;Forebrain;Liver_N12;Liver_N7;Liver_T6;Liver_T8;GM12878;Liver;Liver_N6;Thyroid;Cortex;Liver_T11;Liver_T13;SH-SY5Y_D0_exp1;Diencephalon;Liver_T12;PA1;Temporal;H1;SH-SY5Y_D2_exp1;Cerebellum;HepG2;Occipital;Parietal;HeLa_S3;HUVEC;Liver_T15;SH-SY5Y_D0_exp2;Liver_T3;Heart;Liver_N3;SH-SY5Y_D8_exp2;Liver_N11;Lung;Stomach;A549;BJ;NHEK;Liver_N13;AG04450;K562;Liver_N8;Liver_T7;Liver_N14;Liver_N10;Liver_T14;Hs68;Liver_N18;Liver_T20;Liver_T18;Liver_T22;Liver_N19;Liver_T17;Liver_N17;Liver_N20;Liver_N22;Liver_T21;Liver_N21
Method for Estimation Ribo-;poly(A)-;RNaseR
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases circ_007988 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr16:53907697-53922863:+
CircRNA type n/a Gene ID ENSG00000140718.20
Gene Name FTO Detection pipeline Find_circ
Sample Type colorectal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases chr16:53907697-53922863 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr16:53907697-53922863:n/a
CircRNA type n/a Gene ID ENSG00000140718.14
Gene Name FTO Detection pipeline UROBORUS
Sample Type gliomas
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases hsa_circRNA_101816 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr16:53907697-53922863:+
CircRNA type exonic Gene ID ENSG00000140718.20
Gene Name FTO Detection pipeline n/a
Sample Type Esophageal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases circRNA_0005941 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr16:53907697-53922863:+
CircRNA type N/A Gene ID ENSG00000140718.20
Gene Name FTO Detection pipeline N/A
Sample Type Acne
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer AACCCATGGCTCAACTGGAA
Reverse Primer TGGGTGGAACTAAACCGAGG
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
124 GTCAACCCATGGCTCAACTG CACTCGGTGGGTGGAACTAA 55 55 59.116 59.317 150 273 20 20
122 ACTGGAAGCACTGTGGAAGA ACACTTACCTCTGCCACTCG 50 55 58.868 59.396 166 287 20 20
146 CAGGTCGAGTTTGAGTGGCT TTGGTGGGTGGCATTGAGAT 55 50 59.966 59.591 77 222 20 20
172 TCAACTGGAAGCACTGTGGA CAACCACTTCTGTCACATCCA 50 47.619 59.163 58.15 163 334 20 21
227 TGTCCTCGCTTGTCTATCACA TTGTGAACCGGCCAAAACAC 47.619 50 58.832 59.826 20 246 21 20
185 CATGGCTCAACTGGAAGCAC GCTCATTCAACCACTTCTGTCA 55 45.455 59.475 58.859 157 341 20 22
105 AGGCAATCGATACAGAAAGTGC GTGGGTGGCATTGAGATCATC 45.455 52.381 59.061 59.048 115 219 22 21
180 AACCCATGGCTCAACTGGAA ACCACTTCTGTCACATCCAATT 50 40.909 59.518 57.896 153 332 20 22
136 TGGTTTCAAGGCAATCGATACA GAACCGGCCAAAACACAGT 40.909 52.632 58.32 58.888 107 242 22 19
124 GTCAACCCATGGCTCAACTG CACTCGGTGGGTGGAACTAA 55 55 59.116 59.317 150 273 20 20
122 ACTGGAAGCACTGTGGAAGA ACACTTACCTCTGCCACTCG 50 55 58.868 59.396 166 287 20 20
146 CAGGTCGAGTTTGAGTGGCT TTGGTGGGTGGCATTGAGAT 55 50 59.966 59.591 77 222 20 20
227 TGTCCTCGCTTGTCTATCACA TTGTGAACCGGCCAAAACAC 47.619 50 58.832 59.826 20 246 21 20
172 TCAACTGGAAGCACTGTGGA CAACCACTTCTGTCACATCCA 50 47.619 59.163 58.15 163 334 20 21
105 AGGCAATCGATACAGAAAGTGC GTGGGTGGCATTGAGATCATC 45.455 52.381 59.061 59.048 115 219 22 21
185 CATGGCTCAACTGGAAGCAC GCTCATTCAACCACTTCTGTCA 55 45.455 59.475 58.859 157 341 20 22
180 AACCCATGGCTCAACTGGAA ACCACTTCTGTCACATCCAATT 50 40.909 59.518 57.896 153 332 20 22
136 TGGTTTCAAGGCAATCGATACA GAACCGGCCAAAACACAGT 40.909 52.632 58.32 58.888 107 242 22 19
124 GTCAACCCATGGCTCAACTG CACTCGGTGGGTGGAACTAA 55 55 59.116 59.317 150 273 20 20
122 ACTGGAAGCACTGTGGAAGA ACACTTACCTCTGCCACTCG 50 55 58.868 59.396 166 287 20 20
146 CAGGTCGAGTTTGAGTGGCT TTGGTGGGTGGCATTGAGAT 55 50 59.966 59.591 77 222 20 20
227 TGTCCTCGCTTGTCTATCACA TTGTGAACCGGCCAAAACAC 47.619 50 58.832 59.826 20 246 21 20
105 AGGCAATCGATACAGAAAGTGC GTGGGTGGCATTGAGATCATC 45.455 52.381 59.061 59.048 115 219 22 21
172 TCAACTGGAAGCACTGTGGA CAACCACTTCTGTCACATCCA 50 47.619 59.163 58.15 163 334 20 21
185 CATGGCTCAACTGGAAGCAC GCTCATTCAACCACTTCTGTCA 55 45.455 59.475 58.859 157 341 20 22
180 AACCCATGGCTCAACTGGAA ACCACTTCTGTCACATCCAATT 50 40.909 59.518 57.896 153 332 20 22
136 TGGTTTCAAGGCAATCGATACA GAACCGGCCAAAACACAGT 40.909 52.632 58.32 58.888 107 242 22 19
124 GTCAACCCATGGCTCAACTG CACTCGGTGGGTGGAACTAA 55 55 59.116 59.317 150 273 20 20
227 TGTCCTCGCTTGTCTATCACA TTGTGAACCGGCCAAAACAC 47.619 50 58.832 59.826 20 246 21 20
122 ACTGGAAGCACTGTGGAAGA ACACTTACCTCTGCCACTCG 50 55 58.868 59.396 166 287 20 20
172 TCAACTGGAAGCACTGTGGA CAACCACTTCTGTCACATCCA 50 47.619 59.163 58.15 163 334 20 21
185 CATGGCTCAACTGGAAGCAC GCTCATTCAACCACTTCTGTCA 55 45.455 59.475 58.859 157 341 20 22
105 AGGCAATCGATACAGAAAGTGC GTGGGTGGCATTGAGATCATC 45.455 52.381 59.061 59.048 115 219 22 21
146 CAGGTCGAGTTTGAGTGGCT TTGGTGGGTGGCATTGAGAT 55 50 59.966 59.591 77 222 20 20
180 AACCCATGGCTCAACTGGAA ACCACTTCTGTCACATCCAATT 50 40.909 59.518 57.896 153 332 20 22
136 TGGTTTCAAGGCAATCGATACA GAACCGGCCAAAACACAGT 40.909 52.632 58.32 58.888 107 242 22 19