| Aliases | hsa_circ_0007928 | Scientific name | Homo sapiens (hg19) | ||||
| Organism | Human | Genome Locus | chr4:52729602-52752804:+ | ||||
| CircRNA type | . | Gene ID | ENSG00000212490.1 | ||||
| Gene Name | RF00568 | Detection pipeline | . | ||||
| Sample Type | Hs68_RNase; Hs68_control; K562; Bj; Ag04450; A549; Sknshra | ||||||||
| Method for Estimation | RNA-Seq with Rnase R resistance | ||||||||
| Circular RNA status | Experimented | PCR Details | Link to the detailed experimental procedure | ||||||
| Primers (Experimented) | |||||||||
| Primers (Validated) | |||||||||
| Forward Primer | . | ||||||||
| Reverse Primer | . | ||||||||
| Aliases | HSA_CIRCpedia_48799 | Scientific name | Homo sapiens (hg19) | ||||
| Organism | Human | Genome Locus | chr4:52729602-52752804 | ||||
| CircRNA type | . | Gene ID | NA | ||||
| Gene Name | NA | Detection pipeline | . | ||||
| Sample Type | SH-SY5Y_D4_exp1;Liver_N14;Liver_N3;AG04450;SH-SY5Y_D0_exp1;Liver_N6;Liver_T12;H1;Liver_N7;BJ;Occipital;GM12878;Stomach;Liver;Liver_T15;Liver_N11;Forebrain;Lung;Liver_T10;SH-SY5Y_D8_exp2;K562;Cortex;Liver_T3;Liver_N12;Heart;Liver_T8;Liver_T14;H9;Thyroid;Parietal;Temporal;Liver_N10;Cerebellum;Liver_T7;Liver_N13;Liver_T13;Diencephalon;Liver_N15;Liver_T6;Liver_N8;NHEK;Hs68;Liver_T20;Liver_N20;Liver_N17;Liver_N19;Liver_T19;Liver_T18;Liver_T17;Liver_N21;Liver_T21;Liver_T22;Liver_N22;Liver_N18 | ||||||||
| Method for Estimation | Ribo-;poly(A)-;RNaseR | ||||||||
| Circular RNA status | Experimented | PCR Details | Link to the detailed experimental procedure | ||||||
| Primers (Experimented) | |||||||||
| Primers (Validated) | |||||||||
| Forward Primer | . | ||||||||
| Reverse Primer | . | ||||||||
| Aliases | circ_007436 | Scientific name | Homo sapiens (hg19) | ||||
| Organism | Human | Genome Locus | chr4:52729602-52752804:+ | ||||
| CircRNA type | n/a | Gene ID | ENSG00000212490.1 | ||||
| Gene Name | RF00568 | Detection pipeline | Find_circ | ||||
| Sample Type | colorectal cancer | ||||||||
| Method for Estimation | . | ||||||||
| Circular RNA status | Experimented | PCR Details | Link to the detailed experimental procedure | ||||||
| Primers (Experimented) | |||||||||
| Primers (Validated) | |||||||||
| Forward Primer | . | ||||||||
| Reverse Primer | . | ||||||||
| Aliases | hsa_circRNA_103637 | Scientific name | Homo sapiens (hg19) | ||||
| Organism | Human | Genome Locus | chr4:52729602-52752804:+ | ||||
| CircRNA type | exonic | Gene ID | ENSG00000212490.1 | ||||
| Gene Name | RF00568 | Detection pipeline | n/a | ||||
| Sample Type | Esophageal cancer | ||||||||
| Method for Estimation | . | ||||||||
| Circular RNA status | Experimented | PCR Details | Link to the detailed experimental procedure | ||||||
| Primers (Experimented) | |||||||||
| Primers (Validated) | |||||||||
| Forward Primer | . | ||||||||
| Reverse Primer | . | ||||||||
| Aliases | hsa_circ_0007928 | Scientific name | Homo sapiens (hg19) | ||||
| Organism | Human | Genome Locus | chr4:52729602-52752804:n/a | ||||
| CircRNA type | n/a | Gene ID | NA | ||||
| Gene Name | NA | Detection pipeline | n/a | ||||
| Sample Type | cervical carcinoma | ||||||||
| Method for Estimation | . | ||||||||
| Circular RNA status | Experimented | PCR Details | Link to the detailed experimental procedure | ||||||
| Primers (Experimented) | |||||||||
| Primers (Validated) | |||||||||
| Forward Primer | . | ||||||||
| Reverse Primer | . | ||||||||
| Aliases | hsa_circ_0007928 | Scientific name | Homo sapiens (hg19) | ||||
| Organism | Human | Genome Locus | chr4:52729602-52752804:+ | ||||
| CircRNA type | N/A | Gene ID | ENSG00000212490.1 | ||||
| Gene Name | RF00568 | Detection pipeline | N/A | ||||
| Sample Type | Cervical carcinoma | ||||||||
| Method for Estimation | Microarray and Quantitative PCR | ||||||||
| Circular RNA status | Validated | PCR Details | Link to the detailed experimental procedure | ||||||
| Primers (Experimented) | |||||||||
| Primers (Validated) | |||||||||
| Forward Primer | GATGATGTTGTAGGCCCTGAA | ||||||||
| Reverse Primer | CGTCTTGGCCAATGTCTTCT | ||||||||
| Suggested primers | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Product size | Left primer | Right primer | Left GC | Right GC | Left TM | Right TM | Left pos | Right pos | Left size | Right size | |
| 156 | AGTATGGTGTGCATGGTCAGA | TGCCAGTGTTGAGAGATGAGA | 47.619 | 47.619 | 59.091 | 58.749 | 79 | 234 | 21 | 21 | |
| 150 | TGGTGTGCATGGTCAGATTT | CCAGTGTTGAGAGATGAGAGTTC | 45 | 47.826 | 57.709 | 58.506 | 83 | 232 | 20 | 23 | |
| 194 | TGGTGTGCATGGTCAGATTTAAT | ACTTACCAGCTTATTAAGGGTGT | 39.13 | 39.13 | 58.657 | 57.226 | 83 | 276 | 23 | 23 | |
| 140 | TGATGATGTTGTAGGCCCTGA | ACCAGCTTATTAAGGGTGTGGT | 47.619 | 45.455 | 58.804 | 59.352 | 133 | 272 | 21 | 22 | |
| 140 | ACTGATGATGTTGTAGGCCC | CAGCTTATTAAGGGTGTGGTAGA | 50 | 43.478 | 57.282 | 57.647 | 131 | 270 | 20 | 23 | |
| 156 | AGTATGGTGTGCATGGTCAGA | TGCCAGTGTTGAGAGATGAGA | 47.619 | 47.619 | 59.091 | 58.749 | 79 | 234 | 21 | 21 | |
| 140 | TGATGATGTTGTAGGCCCTGA | ACCAGCTTATTAAGGGTGTGGT | 47.619 | 45.455 | 58.804 | 59.352 | 133 | 272 | 21 | 22 | |
| 150 | TGGTGTGCATGGTCAGATTT | CCAGTGTTGAGAGATGAGAGTTC | 45 | 47.826 | 57.709 | 58.506 | 83 | 232 | 20 | 23 | |
| 140 | ACTGATGATGTTGTAGGCCC | CAGCTTATTAAGGGTGTGGTAGA | 50 | 43.478 | 57.282 | 57.647 | 131 | 270 | 20 | 23 | |
| 194 | TGGTGTGCATGGTCAGATTTAAT | ACTTACCAGCTTATTAAGGGTGT | 39.13 | 39.13 | 58.657 | 57.226 | 83 | 276 | 23 | 23 | |
| 150 | TGGTGTGCATGGTCAGATTT | CCAGTGTTGAGAGATGAGAGTTC | 45 | 47.826 | 57.709 | 58.506 | 83 | 232 | 20 | 23 | |
| 156 | AGTATGGTGTGCATGGTCAGA | TGCCAGTGTTGAGAGATGAGA | 47.619 | 47.619 | 59.091 | 58.749 | 79 | 234 | 21 | 21 | |
| 140 | TGATGATGTTGTAGGCCCTGA | ACCAGCTTATTAAGGGTGTGGT | 47.619 | 45.455 | 58.804 | 59.352 | 133 | 272 | 21 | 22 | |
| 140 | ACTGATGATGTTGTAGGCCC | CAGCTTATTAAGGGTGTGGTAGA | 50 | 43.478 | 57.282 | 57.647 | 131 | 270 | 20 | 23 | |
| 194 | TGGTGTGCATGGTCAGATTTAAT | ACTTACCAGCTTATTAAGGGTGT | 39.13 | 39.13 | 58.657 | 57.226 | 83 | 276 | 23 | 23 | |
| 156 | AGTATGGTGTGCATGGTCAGA | TGCCAGTGTTGAGAGATGAGA | 47.619 | 47.619 | 59.091 | 58.749 | 79 | 234 | 21 | 21 | |
| 150 | TGGTGTGCATGGTCAGATTT | CCAGTGTTGAGAGATGAGAGTTC | 45 | 47.826 | 57.709 | 58.506 | 83 | 232 | 20 | 23 | |
| 140 | ACTGATGATGTTGTAGGCCC | CAGCTTATTAAGGGTGTGGTAGA | 50 | 43.478 | 57.282 | 57.647 | 131 | 270 | 20 | 23 | |
| 194 | TGGTGTGCATGGTCAGATTTAAT | ACTTACCAGCTTATTAAGGGTGT | 39.13 | 39.13 | 58.657 | 57.226 | 83 | 276 | 23 | 23 | |
| 140 | TGATGATGTTGTAGGCCCTGA | ACCAGCTTATTAAGGGTGTGGT | 47.619 | 45.455 | 58.804 | 59.352 | 133 | 272 | 21 | 22 | |