Aliases hsa_circ_0005912 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr4:54265896-54294350:+
CircRNA type . Gene ID ENSG00000134853.11
Gene Name PDGFRA Detection pipeline .
Sample Type Hs68_RNase; Hs68_control; K562; Helas3; H1hesc; Gm12878; Bj; Ag04450; A549; Nhek; Sknshra; Mcf7
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases HSA_CIRCpedia_48826 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr4:54265896-54294350
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type SH-SY5Y_D0_exp2;Liver_T10;BJ;Thyroid;K562;Liver_T15;GM12878;Liver_T7;Forebrain;H9;Temporal;Liver_N7;Liver_N10;Occipital;Cortex;Liver_T6;A549;PA1;Liver;Liver_T14;NHEK;Cerebellum;HepG2;Parietal;Liver_N14;AG04450;Liver_N3;Liver_N13;SH-SY5Y_D0_exp1;Liver_N12;HeLa_S3;Liver_N15;Liver_T12;Diencephalon;Lung;H1;Liver_N6;Liver_T13;Liver_T8;Hs68;Liver_T21;Liver_N21;Liver_T20;Liver_N20;Liver_N19;Liver_N22;Liver_N17;Liver_N18;Liver_T17
Method for Estimation Ribo-;poly(A)-;RNaseR
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases hsa_circRNA_103643 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr4:54265896-54294350:+
CircRNA type exonic Gene ID ENSG00000134853.11
Gene Name PDGFRA Detection pipeline n/a
Sample Type Esophageal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases hsa_circ_0005912 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr4:54265896-54294350:+
CircRNA type N/A Gene ID ENSG00000134853.11
Gene Name PDGFRA Detection pipeline N/A
Sample Type Basal cell carcinoma
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer AATTTTAGCAAACCACCTCCGT
Reverse Primer TCTGAGTTTCCAGTTCTTCCC
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
102 ctcctcccactcaccttcc AGTTCTTCCCTGCTGTACCC 63.158 55 58.708 59.015 116 217 19 20
100 ccactcaccttccacctcc TTCCAGTTCTTCCCTGCTGT 63.158 50 59.32 58.86 122 221 19 20
114 tttcttccacctcctccGAC GCTTTTGTAGATGGAAGGGCA 55 47.619 59.026 58.554 145 258 20 21
100 tcaccttccacctcctccat GAGTTTCCAGTTCTTCCCTGC 55 52.381 59.881 58.845 126 225 20 21
109 cctccatttcttccacctcct TGGAAGGGCAGTTTCTTTCTC 52.381 47.619 59.081 58.136 139 247 21 21
124 tccacctcctccatttcttcc TTTGTAGATGGAAGGGCAGTT 52.381 42.857 59.084 57.193 132 255 21 21
118 cctcctccatttcttccacct TGTAGATGGAAGGGCAGTTTCT 52.381 45.455 59.081 59.087 136 253 21 22
114 ccttccacctcctccatttct GGGCAGTTTCTTTCTCTGAGT 52.381 47.619 59.081 57.867 129 242 21 21
112 TCCACCTCTGATTCCACCAC TTGAACAAAGAAGGAGGAGAAGT 55 39.13 59.016 57.626 177 288 20 23
122 ctcccactcaccttccacc GCAGTTTCTTTCTCTGAGTTTCC 63.158 43.478 59.32 57.898 119 240 19 23
100 AGctcctcccactcacct CTTCCCTGCTGTACCCGGT 61.111 63.158 59.134 61.291 114 213 18 19
102 ctcctcccactcaccttcc AGTTCTTCCCTGCTGTACCC 63.158 55 58.708 59.015 116 217 19 20
114 tttcttccacctcctccGAC GCTTTTGTAGATGGAAGGGCA 55 47.619 59.026 58.554 145 258 20 21
100 tcaccttccacctcctccat GAGTTTCCAGTTCTTCCCTGC 55 52.381 59.881 58.845 126 225 20 21
118 cctcctccatttcttccacct TGTAGATGGAAGGGCAGTTTCT 52.381 45.455 59.081 59.087 136 253 21 22
100 ccactcaccttccacctcc TTCCAGTTCTTCCCTGCTGT 63.158 50 59.32 58.86 122 221 19 20
109 cctccatttcttccacctcct TGGAAGGGCAGTTTCTTTCTC 52.381 47.619 59.081 58.136 139 247 21 21
114 ccttccacctcctccatttct GGGCAGTTTCTTTCTCTGAGT 52.381 47.619 59.081 57.867 129 242 21 21
124 tccacctcctccatttcttcc TTTGTAGATGGAAGGGCAGTT 52.381 42.857 59.084 57.193 132 255 21 21
122 ctcccactcaccttccacc GCAGTTTCTTTCTCTGAGTTTCC 63.158 43.478 59.32 57.898 119 240 19 23
112 TCCACCTCTGATTCCACCAC TTGAACAAAGAAGGAGGAGAAGT 55 39.13 59.016 57.626 177 288 20 23
100 AGctcctcccactcacct CTTCCCTGCTGTACCCGGT 61.111 63.158 59.134 61.291 114 213 18 19
102 ctcctcccactcaccttcc AGTTCTTCCCTGCTGTACCC 63.158 55 58.708 59.015 116 217 19 20
100 ccactcaccttccacctcc TTCCAGTTCTTCCCTGCTGT 63.158 50 59.32 58.86 122 221 19 20
114 tttcttccacctcctccGAC GCTTTTGTAGATGGAAGGGCA 55 47.619 59.026 58.554 145 258 20 21
100 tcaccttccacctcctccat GAGTTTCCAGTTCTTCCCTGC 55 52.381 59.881 58.845 126 225 20 21
114 ccttccacctcctccatttct GGGCAGTTTCTTTCTCTGAGT 52.381 47.619 59.081 57.867 129 242 21 21
109 cctccatttcttccacctcct TGGAAGGGCAGTTTCTTTCTC 52.381 47.619 59.081 58.136 139 247 21 21
124 tccacctcctccatttcttcc TTTGTAGATGGAAGGGCAGTT 52.381 42.857 59.084 57.193 132 255 21 21
112 TCCACCTCTGATTCCACCAC TTGAACAAAGAAGGAGGAGAAGT 55 39.13 59.016 57.626 177 288 20 23
118 cctcctccatttcttccacct TGTAGATGGAAGGGCAGTTTCT 52.381 45.455 59.081 59.087 136 253 21 22
122 ctcccactcaccttccacc GCAGTTTCTTTCTCTGAGTTTCC 63.158 43.478 59.32 57.898 119 240 19 23
100 AGctcctcccactcacct CTTCCCTGCTGTACCCGGT 61.111 63.158 59.134 61.291 114 213 18 19
114 tttcttccacctcctccGAC GCTTTTGTAGATGGAAGGGCA 55 47.619 59.026 58.554 145 258 20 21
100 ccactcaccttccacctcc TTCCAGTTCTTCCCTGCTGT 63.158 50 59.32 58.86 122 221 19 20
102 ctcctcccactcaccttcc AGTTCTTCCCTGCTGTACCC 63.158 55 58.708 59.015 116 217 19 20
100 tcaccttccacctcctccat GAGTTTCCAGTTCTTCCCTGC 55 52.381 59.881 58.845 126 225 20 21
109 cctccatttcttccacctcct TGGAAGGGCAGTTTCTTTCTC 52.381 47.619 59.081 58.136 139 247 21 21
114 ccttccacctcctccatttct GGGCAGTTTCTTTCTCTGAGT 52.381 47.619 59.081 57.867 129 242 21 21
118 cctcctccatttcttccacct TGTAGATGGAAGGGCAGTTTCT 52.381 45.455 59.081 59.087 136 253 21 22
124 tccacctcctccatttcttcc TTTGTAGATGGAAGGGCAGTT 52.381 42.857 59.084 57.193 132 255 21 21
112 TCCACCTCTGATTCCACCAC TTGAACAAAGAAGGAGGAGAAGT 55 39.13 59.016 57.626 177 288 20 23
122 ctcccactcaccttccacc GCAGTTTCTTTCTCTGAGTTTCC 63.158 43.478 59.32 57.898 119 240 19 23
100 AGctcctcccactcacct CTTCCCTGCTGTACCCGGT 61.111 63.158 59.134 61.291 114 213 18 19