Aliases hsa_circ_0000284 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr11:33307958-33309057:+
CircRNA type . Gene ID ENSG00000110422.7
Gene Name HIPK3 Detection pipeline .
Sample Type HEK293; cd_19; cd_34; neutr; Hs68_RNase; Hs68_control; K562; Huvec; Hsmm; Hepg2; Helas3; H1hesc; Gm12878; Bj; Ag04450; A549; Nhek; Nhlf; Sknshra; Mcf7
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25234927
Aliases HSA_CIRCpedia_4134 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr11:33307958-33309057
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type Liver_N6;BJ;HUVEC;H1;Stomach;Temporal;SK_N_SH;SH-SY5Y_D4_exp1;Liver_T8;Thyroid;Liver_N7;Liver_N11;Liver_T7;PA1;Liver_N14;Liver_N15;Liver_T14;Occipital;SH-SY5Y_D2_exp1;Liver_T12;Cerebellum;Heart;GM12878;H9;Liver_N3;A549;Diencephalon;Liver_N10;Cortex;Parietal;Lung;SH-SY5Y_D8_exp2;NHEK;Liver_N8;SH-SY5Y_D0_exp2;Liver_T10;HepG2;Liver_T6;Kidney;Liver_T13;AG04450;Liver;K562;Liver_N12;Liver_T11;Forebrain;Liver_N13;SH-SY5Y_D0_exp1;HeLa_S3;Liver_T15;Liver_T3;SH-SY5Y_D4_exp2;Hs68;Liver_T21;Liver_T20;Liver_N22;Liver_N17;Liver_N18;Liver_T18;Liver_T17;Liver_N20;Liver_N19;Liver_T19;Liver_N21;Liver_T22
Method for Estimation Ribo-;poly(A)-;RNaseR
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 30172046
Aliases circ_000230 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr11:33307958-33309057:+
CircRNA type n/a Gene ID ENSG00000110422.7
Gene Name HIPK3 Detection pipeline Find_circ
Sample Type colorectal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25624062
Aliases chr11:33307958-33309057 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr11:33307958-33309057:n/a
CircRNA type n/a Gene ID ENSG00000110422.7
Gene Name HIPK3 Detection pipeline UROBORUS
Sample Type gliomas
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 26873924
Aliases hsa_circRNA_100782 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr11:33307958-33309057:+
CircRNA type exonic Gene ID ENSG00000110422.7
Gene Name HIPK3 Detection pipeline n/a
Sample Type Esophageal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 27465405
Aliases hsa_circRNA_100782 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr11:33307958-33309057:+
CircRNA type N/A Gene ID ENSG00000110422.7
Gene Name HIPK3 Detection pipeline N/A
Sample Type Pre-Eclampsia (PE)
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer GAAGGTGAAGGTCGGAGTC
Reverse Primer GAAGATGGTGATGGGATTTC
Pubmed 27606420
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
250 aaaattagccgggtgtggtg ACACAACTGCTTGGCTCTAC 50 50 58.747 58.116 53 302 20 20
114 cggaaggttgaggcagaaga GTGAGGCCATACaatttcgct 55 47.619 59.678 58.983 98 211 20 21
133 ccagctactcggaaggttga ACCAAGACTTGTGAGGCCAT 55 50 59.104 59.226 89 221 20 20
106 ggttgaggcagaagaatcgt AGGCCATACaatttcgctctt 50 42.857 57.899 57.995 103 208 20 21
118 agcgaaattGTATGGCCTCAC TGGAATACACAACTGCTTGGC 47.619 47.619 58.983 59.114 191 308 21 21
123 cctggatgacaagagcgaaa ACAACTGCTTGGCTCTACTTTG 50 45.455 57.901 59.119 178 300 20 22
130 ctcggaaggttgaggcaga GTAGACCAAGACTTGTGAGGC 57.895 52.381 59.025 58.31 96 225 19 21
212 aggtggaggttgcagtgag TCTACCATTCACATAGGTCCGT 57.895 45.455 59.243 58.361 134 345 19 22
105 agaatcgtttgaacctgggag CAAGACTTGTGAGGCCATACa 47.619 47.619 57.941 57.942 115 219 21 21
123 agagcgaaattGTATGGCCT TCCTGGAATACACAACTGCTT 45 42.857 57.282 57.212 189 311 20 21
179 ccgagatcacgccattgc AGGTCCGTGGATAGTTTCTTTC 61.111 45.455 58.983 57.796 153 331 18 22
219 cagcctggatgacaagagc TGTCTGAAAAGCACTACCCTT 57.895 42.857 58.222 57.143 175 393 19 21
208 cctgggaggtggaggttg ACATAGGTCCGTGGATAGTTTCT 66.667 43.478 58.918 58.712 128 335 18 23
109 ggcagaagaatcgtttgaacct AGACTTGTGAGGCCATACaatt 45.455 40.909 59.186 57.693 109 217 22 22
144 ggaggtggaggttgcagt TTCTTCACACTACAAAAGGCAC 61.111 40.909 58.838 57.107 132 275 18 22
222 CGGCCCATTCTTCAACAAGT ACCAAGACTTGTGAGGCCAT 50 50 58.752 59.226 0 221 20 20
244 TCATGCTGATCTCAAGCCAGA ACACAACTGCTTGGCTCTAC 47.619 50 59.164 58.116 59 302 21 20
204 CGGCCAGTCATGTATCAAAGA TCTACCATTCACATAGGTCCGT 47.619 45.455 58.095 58.361 142 345 21 22
169 GTCGGCCAGTCATGTATCAA TGGAATACACAACTGCTTGGC 50 47.619 57.69 59.114 140 308 20 21
153 TCTACAATCTCGGTACTACAGGT AGGTCCGTGGATAGTTTCTTTC 43.478 45.455 57.892 57.796 179 331 23 22
134 GGTGGATCCTGTTCGGCA GTAGACCAAGACTTGTGAGGC 61.111 52.381 59.331 58.31 92 225 18 21
211 TGTTCGGCAGCCTTACAG TCCTGGAATACACAACTGCTT 55.556 42.857 57.306 57.212 101 311 18 21
262 GCCAGAGAATATTATGTTGGTGG ACATAGGTCCGTGGATAGTTTCT 43.478 43.478 57.304 58.712 74 335 23 23
222 CGGCCCATTCTTCAACAAGT ACCAAGACTTGTGAGGCCAT 50 50 58.752 59.226 0 221 20 20
244 TCATGCTGATCTCAAGCCAGA ACACAACTGCTTGGCTCTAC 47.619 50 59.164 58.116 59 302 21 20
169 GTCGGCCAGTCATGTATCAA TGGAATACACAACTGCTTGGC 50 47.619 57.69 59.114 140 308 20 21
134 GGTGGATCCTGTTCGGCA GTAGACCAAGACTTGTGAGGC 61.111 52.381 59.331 58.31 92 225 18 21
204 CGGCCAGTCATGTATCAAAGA TCTACCATTCACATAGGTCCGT 47.619 45.455 58.095 58.361 142 345 21 22
211 TGTTCGGCAGCCTTACAG TCCTGGAATACACAACTGCTT 55.556 42.857 57.306 57.212 101 311 18 21
153 TCTACAATCTCGGTACTACAGGT AGGTCCGTGGATAGTTTCTTTC 43.478 45.455 57.892 57.796 179 331 23 22
262 GCCAGAGAATATTATGTTGGTGG ACATAGGTCCGTGGATAGTTTCT 43.478 43.478 57.304 58.712 74 335 23 23
222 CGGCCCATTCTTCAACAAGT ACCAAGACTTGTGAGGCCAT 50 50 58.752 59.226 0 221 20 20
244 TCATGCTGATCTCAAGCCAGA ACACAACTGCTTGGCTCTAC 47.619 50 59.164 58.116 59 302 21 20
169 GTCGGCCAGTCATGTATCAA TGGAATACACAACTGCTTGGC 50 47.619 57.69 59.114 140 308 20 21
134 GGTGGATCCTGTTCGGCA GTAGACCAAGACTTGTGAGGC 61.111 52.381 59.331 58.31 92 225 18 21
204 CGGCCAGTCATGTATCAAAGA TCTACCATTCACATAGGTCCGT 47.619 45.455 58.095 58.361 142 345 21 22
211 TGTTCGGCAGCCTTACAG TCCTGGAATACACAACTGCTT 55.556 42.857 57.306 57.212 101 311 18 21
153 TCTACAATCTCGGTACTACAGGT AGGTCCGTGGATAGTTTCTTTC 43.478 45.455 57.892 57.796 179 331 23 22
262 GCCAGAGAATATTATGTTGGTGG ACATAGGTCCGTGGATAGTTTCT 43.478 43.478 57.304 58.712 74 335 23 23