Aliases hsa_circ_0005986 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr1:14057494-14068652:+
CircRNA type . Gene ID ENSG00000116731.18
Gene Name PRDM2 Detection pipeline .
Sample Type Hs68_RNase; Hs68_control; K562; Gm12878; Bj; Ag04450; A549; Sknshra
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25234927
Aliases HSA_CIRCpedia_27666 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr1:14057494-14068652
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type Liver_T11;Cortex;Heart;K562;Parietal;Stomach;Liver_N11;Liver_T10;SH-SY5Y_D2_exp1;Occipital;Liver_N12;Liver_T15;Liver_T8;Lung;Cerebellum;Liver_T13;GM12878;Liver_N14;Temporal;Liver_N13;H9;BJ;Liver_N10;AG04450;NHEK;Liver_T7;Diencephalon;Liver_N8;A549;Liver;SH-SY5Y_D0_exp1;Liver_T14;Liver_T12;PA1;Hs68;Liver_T21;Liver_N19;Liver_T17;Liver_N20
Method for Estimation Ribo-;poly(A)-;RNaseR
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 30172046
Aliases circ_002257 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr1:14057494-14068652:+
CircRNA type n/a Gene ID ENSG00000116731.18
Gene Name PRDM2 Detection pipeline Find_circ
Sample Type colorectal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25624062
Aliases chr1:14057494-14068652 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr1:14057494-14068652:n/a
CircRNA type n/a Gene ID ENSG00000116731.18
Gene Name PRDM2 Detection pipeline UROBORUS
Sample Type gliomas
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 26873924
Aliases hsa_circRNA_100062 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr1:14057494-14068652:+
CircRNA type exonic Gene ID ENSG00000116731.18
Gene Name PRDM2 Detection pipeline n/a
Sample Type Esophageal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 27465405
Aliases hsa_circ_0005986 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr1:14057494-14068652:+
CircRNA type N/A Gene ID ENSG00000116731.18
Gene Name PRDM2 Detection pipeline N/A
Sample Type Liver cell carcinoma
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer GAAACTGGCTGCGATATGTG
Reverse Primer CACAGGCTCAGTAGTGTTCTTTAAA
Pubmed 28410211
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
248 TGTGAATTGGGCTTGCTCAG ACCTGCTCTTTACTGCCTGA 50 50 58.75 58.648 118 365 20 20
181 GAATTGGGCTTGCTCAGGAG AACAGCAGAAGGGAAAAGCC 55 50 58.899 58.668 121 301 20 20
219 CAGAGAAGGGAAACTGGCTG GGGTCTTGTCAACAGCAGAA 55 50 58.181 58.033 93 311 20 20
219 GGGAAACTGGCTGCGATATG CCAATCCGGGTCTTGTCAAC 55 55 59.053 58.835 100 318 20 20
112 TGGCTGCGATATGTGAATTGG CCACAGGCTCAGTAGTGTTC 47.619 55 59.051 57.914 107 218 21 20
151 CTGCGATATGTGAATTGGGCT GCAGCACATGTTCGGGTAC 47.619 57.895 58.775 59.206 110 260 21 19
165 GAAACTGGCTGCGATATGTGA GTCCTCGCAGCACATGTTC 47.619 57.895 58.72 59.21 102 266 21 19
146 TTGGGCTTGCTCAGGAGAAG GAAGTCCTCGCAGCACATG 55 57.895 59.963 58.915 124 269 20 19
217 CGATATGTGAATTGGGCTTGC AGGAGCACTCACCAATCCG 47.619 57.895 57.996 59.401 113 329 21 19
249 CAAATTTGGGATGGATGTGCA TGTCAACAGCAGAAGGGAAA 42.857 45 57.387 57.273 57 305 21 20
218 AAGGGAAACTGGCTGCGAT ATCCGGGTCTTGTCAACAGC 52.632 55 59.62 60.322 98 315 19 20
219 GGGAAACTGGCTGCGATATG CCAATCCGGGTCTTGTCAAC 55 55 59.053 58.835 100 318 20 20
181 GAATTGGGCTTGCTCAGGAG AACAGCAGAAGGGAAAAGCC 55 50 58.899 58.668 121 301 20 20
248 TGTGAATTGGGCTTGCTCAG ACCTGCTCTTTACTGCCTGA 50 50 58.75 58.648 118 365 20 20
219 CAGAGAAGGGAAACTGGCTG GGGTCTTGTCAACAGCAGAA 55 50 58.181 58.033 93 311 20 20
151 CTGCGATATGTGAATTGGGCT GCAGCACATGTTCGGGTAC 47.619 57.895 58.775 59.206 110 260 21 19
165 GAAACTGGCTGCGATATGTGA GTCCTCGCAGCACATGTTC 47.619 57.895 58.72 59.21 102 266 21 19
112 TGGCTGCGATATGTGAATTGG CCACAGGCTCAGTAGTGTTC 47.619 55 59.051 57.914 107 218 21 20
146 TTGGGCTTGCTCAGGAGAAG GAAGTCCTCGCAGCACATG 55 57.895 59.963 58.915 124 269 20 19
218 AAGGGAAACTGGCTGCGAT ATCCGGGTCTTGTCAACAGC 52.632 55 59.62 60.322 98 315 19 20
249 CAAATTTGGGATGGATGTGCA TGTCAACAGCAGAAGGGAAA 42.857 45 57.387 57.273 57 305 21 20
217 CGATATGTGAATTGGGCTTGC AGGAGCACTCACCAATCCG 47.619 57.895 57.996 59.401 113 329 21 19
219 GGGAAACTGGCTGCGATATG CCAATCCGGGTCTTGTCAAC 55 55 59.053 58.835 100 318 20 20
181 GAATTGGGCTTGCTCAGGAG AACAGCAGAAGGGAAAAGCC 55 50 58.899 58.668 121 301 20 20
248 TGTGAATTGGGCTTGCTCAG ACCTGCTCTTTACTGCCTGA 50 50 58.75 58.648 118 365 20 20
219 CAGAGAAGGGAAACTGGCTG GGGTCTTGTCAACAGCAGAA 55 50 58.181 58.033 93 311 20 20
146 TTGGGCTTGCTCAGGAGAAG GAAGTCCTCGCAGCACATG 55 57.895 59.963 58.915 124 269 20 19
112 TGGCTGCGATATGTGAATTGG CCACAGGCTCAGTAGTGTTC 47.619 55 59.051 57.914 107 218 21 20
151 CTGCGATATGTGAATTGGGCT GCAGCACATGTTCGGGTAC 47.619 57.895 58.775 59.206 110 260 21 19
165 GAAACTGGCTGCGATATGTGA GTCCTCGCAGCACATGTTC 47.619 57.895 58.72 59.21 102 266 21 19
217 CGATATGTGAATTGGGCTTGC AGGAGCACTCACCAATCCG 47.619 57.895 57.996 59.401 113 329 21 19
218 AAGGGAAACTGGCTGCGAT ATCCGGGTCTTGTCAACAGC 52.632 55 59.62 60.322 98 315 19 20
249 CAAATTTGGGATGGATGTGCA TGTCAACAGCAGAAGGGAAA 42.857 45 57.387 57.273 57 305 21 20
219 GGGAAACTGGCTGCGATATG CCAATCCGGGTCTTGTCAAC 55 55 59.053 58.835 100 318 20 20
181 GAATTGGGCTTGCTCAGGAG AACAGCAGAAGGGAAAAGCC 55 50 58.899 58.668 121 301 20 20
248 TGTGAATTGGGCTTGCTCAG ACCTGCTCTTTACTGCCTGA 50 50 58.75 58.648 118 365 20 20
219 CAGAGAAGGGAAACTGGCTG GGGTCTTGTCAACAGCAGAA 55 50 58.181 58.033 93 311 20 20
146 TTGGGCTTGCTCAGGAGAAG GAAGTCCTCGCAGCACATG 55 57.895 59.963 58.915 124 269 20 19
151 CTGCGATATGTGAATTGGGCT GCAGCACATGTTCGGGTAC 47.619 57.895 58.775 59.206 110 260 21 19
165 GAAACTGGCTGCGATATGTGA GTCCTCGCAGCACATGTTC 47.619 57.895 58.72 59.21 102 266 21 19
112 TGGCTGCGATATGTGAATTGG CCACAGGCTCAGTAGTGTTC 47.619 55 59.051 57.914 107 218 21 20
218 AAGGGAAACTGGCTGCGAT ATCCGGGTCTTGTCAACAGC 52.632 55 59.62 60.322 98 315 19 20
217 CGATATGTGAATTGGGCTTGC AGGAGCACTCACCAATCCG 47.619 57.895 57.996 59.401 113 329 21 19
249 CAAATTTGGGATGGATGTGCA TGTCAACAGCAGAAGGGAAA 42.857 45 57.387 57.273 57 305 21 20