Aliases hsa_circ_0002260 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr5:78936673-78964851:+
CircRNA type . Gene ID ENSG00000164329.9
Gene Name PAPD4 Detection pipeline .
Sample Type Hs68_RNase; Hs68_control; K562; Hepg2; Bj
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases HSA_CIRCpedia_52749 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr5:78936673-78964851
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type Liver_T3;Liver_N15;PA1;H9;Liver_N6;SH-SY5Y_D0_exp1;Liver_T13;Forebrain;Diencephalon;K562;Thyroid;Liver_N8;SH-SY5Y_D0_exp2;Liver_N7;Liver;Temporal;SH-SY5Y_D8_exp2;GM12878;BJ;Liver_N12;Liver_T11;Liver_N10;Cerebellum;Liver_T6;Parietal;H1;Liver_T8;Occipital;SH-SY5Y_D4_exp1;Liver_T10;Heart;Liver_T14;Cortex;Liver_T15;NHEK;Lung;Stomach;HepG2;Liver_N13;Liver_T7;Liver_T12;Liver_N11;Liver_N14;Hs68;Liver_N17;Liver_N21;Liver_N20;Liver_T21;Liver_T18;Liver_N22;Liver_T22;Liver_N19;Liver_T20;Liver_N18;Liver_T17
Method for Estimation Ribo-;RNaseR;poly(A)-
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases circ_008754 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr5:78936673-78964851:+
CircRNA type n/a Gene ID ENSG00000164329.9
Gene Name PAPD4 Detection pipeline Find_circ
Sample Type colorectal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases hsa_circ_0002260 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr5:78936673-78964851:+
CircRNA type N/A Gene ID ENSG00000164329.9
Gene Name PAPD4 Detection pipeline N/A
Sample Type Hypopharyngeal Squamous Cell Carcinoma
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer ATCAAACCTTGGGGACCTCT
Reverse Primer AAAGAGGACCCAACCAAAAA
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
210 CAGCTGCACCTTGTACATCA CTCTCTGCAGCTGTGTTCGA 50 55 58.188 60.039 84 293 20 20
141 GACCTCTTACTGGGCTTTCTT TTTCTCTCTGCAGCTGTGTT 47.619 45 57.295 57.372 156 296 21 20
199 AGCTCCATGTAATGTTCCTCCT GCTGAATTTCTCTCTGCAGCT 45.455 47.619 58.881 58.642 104 302 22 21
166 CTATACAGCTGCACCTTGTACA TTGCTGCTGACATGTTTCAAA 45.455 38.095 57.877 57.203 79 244 22 21
137 TGTTCCTCCTTACCTCTCAAAGA TCACTTATTTGCTGCTGACATGT 43.478 39.13 58.51 58.926 116 252 23 23
182 TCAAGCTCCATGTAATGTTCCT TGTGTTCGACAGAGTTCTTTCT 40.909 40.909 57.425 57.613 101 282 22 22
125 TCCTCCTTACCTCTCAAAGAATG TGCTGCTGACATGTTTCAAATAA 43.478 34.783 57.316 57.549 119 243 23 23
124 ACCTCTTACTGGGCTTTCTTAAA TGTTCGACAGAGTTCTTTCTTCT 39.13 39.13 57.422 57.736 157 280 23 23
214 TCCATGTAATGTTCCTCCTTACC ACATACGTGGAAATAACAGCTGA 43.478 39.13 57.632 58.172 107 320 23 23
205 GTAATGTTCCTCCTTACCTCTCA ACGTGGAAATAACAGCTGAATTT 43.478 34.783 57.066 57.294 112 316 23 23
199 AGCTCCATGTAATGTTCCTCCT GCTGAATTTCTCTCTGCAGCT 45.455 47.619 58.881 58.642 104 302 22 21
210 CAGCTGCACCTTGTACATCA CTCTCTGCAGCTGTGTTCGA 50 55 58.188 60.039 84 293 20 20
141 GACCTCTTACTGGGCTTTCTT TTTCTCTCTGCAGCTGTGTT 47.619 45 57.295 57.372 156 296 21 20
166 CTATACAGCTGCACCTTGTACA TTGCTGCTGACATGTTTCAAA 45.455 38.095 57.877 57.203 79 244 22 21
137 TGTTCCTCCTTACCTCTCAAAGA TCACTTATTTGCTGCTGACATGT 43.478 39.13 58.51 58.926 116 252 23 23
182 TCAAGCTCCATGTAATGTTCCT TGTGTTCGACAGAGTTCTTTCT 40.909 40.909 57.425 57.613 101 282 22 22
214 TCCATGTAATGTTCCTCCTTACC ACATACGTGGAAATAACAGCTGA 43.478 39.13 57.632 58.172 107 320 23 23
124 ACCTCTTACTGGGCTTTCTTAAA TGTTCGACAGAGTTCTTTCTTCT 39.13 39.13 57.422 57.736 157 280 23 23
205 GTAATGTTCCTCCTTACCTCTCA ACGTGGAAATAACAGCTGAATTT 43.478 34.783 57.066 57.294 112 316 23 23
125 TCCTCCTTACCTCTCAAAGAATG TGCTGCTGACATGTTTCAAATAA 43.478 34.783 57.316 57.549 119 243 23 23
210 CAGCTGCACCTTGTACATCA CTCTCTGCAGCTGTGTTCGA 50 55 58.188 60.039 84 293 20 20
199 AGCTCCATGTAATGTTCCTCCT GCTGAATTTCTCTCTGCAGCT 45.455 47.619 58.881 58.642 104 302 22 21
141 GACCTCTTACTGGGCTTTCTT TTTCTCTCTGCAGCTGTGTT 47.619 45 57.295 57.372 156 296 21 20
166 CTATACAGCTGCACCTTGTACA TTGCTGCTGACATGTTTCAAA 45.455 38.095 57.877 57.203 79 244 22 21
182 TCAAGCTCCATGTAATGTTCCT TGTGTTCGACAGAGTTCTTTCT 40.909 40.909 57.425 57.613 101 282 22 22
137 TGTTCCTCCTTACCTCTCAAAGA TCACTTATTTGCTGCTGACATGT 43.478 39.13 58.51 58.926 116 252 23 23
214 TCCATGTAATGTTCCTCCTTACC ACATACGTGGAAATAACAGCTGA 43.478 39.13 57.632 58.172 107 320 23 23
124 ACCTCTTACTGGGCTTTCTTAAA TGTTCGACAGAGTTCTTTCTTCT 39.13 39.13 57.422 57.736 157 280 23 23
205 GTAATGTTCCTCCTTACCTCTCA ACGTGGAAATAACAGCTGAATTT 43.478 34.783 57.066 57.294 112 316 23 23
125 TCCTCCTTACCTCTCAAAGAATG TGCTGCTGACATGTTTCAAATAA 43.478 34.783 57.316 57.549 119 243 23 23
141 GACCTCTTACTGGGCTTTCTT TTTCTCTCTGCAGCTGTGTT 47.619 45 57.295 57.372 156 296 21 20
210 CAGCTGCACCTTGTACATCA CTCTCTGCAGCTGTGTTCGA 50 55 58.188 60.039 84 293 20 20
166 CTATACAGCTGCACCTTGTACA TTGCTGCTGACATGTTTCAAA 45.455 38.095 57.877 57.203 79 244 22 21
199 AGCTCCATGTAATGTTCCTCCT GCTGAATTTCTCTCTGCAGCT 45.455 47.619 58.881 58.642 104 302 22 21
137 TGTTCCTCCTTACCTCTCAAAGA TCACTTATTTGCTGCTGACATGT 43.478 39.13 58.51 58.926 116 252 23 23
182 TCAAGCTCCATGTAATGTTCCT TGTGTTCGACAGAGTTCTTTCT 40.909 40.909 57.425 57.613 101 282 22 22
214 TCCATGTAATGTTCCTCCTTACC ACATACGTGGAAATAACAGCTGA 43.478 39.13 57.632 58.172 107 320 23 23
124 ACCTCTTACTGGGCTTTCTTAAA TGTTCGACAGAGTTCTTTCTTCT 39.13 39.13 57.422 57.736 157 280 23 23
125 TCCTCCTTACCTCTCAAAGAATG TGCTGCTGACATGTTTCAAATAA 43.478 34.783 57.316 57.549 119 243 23 23
205 GTAATGTTCCTCCTTACCTCTCA ACGTGGAAATAACAGCTGAATTT 43.478 34.783 57.066 57.294 112 316 23 23