Aliases hsa_circ_0006460 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr7:140476711-140494267:-
CircRNA type . Gene ID ENSG00000133606.10
Gene Name MKRN1 Detection pipeline .
Sample Type Hs68_RNase; Hs68_control
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25234927
Aliases HSA_CIRCpedia_57081 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr7:140476711-140494267
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type Thyroid;AG04450;PA1;Liver_T15;SH-SY5Y_D2_exp1;SH-SY5Y_D8_exp2;Liver_T14;H1;Liver_T10;H9;Stomach;Liver_N12;Heart;SH-SY5Y_D0_exp1;Liver;Liver_N8;BJ;Cortex;Kidney;SH-SY5Y_D4_exp1;A549;Temporal;Liver_T3;Diencephalon;Liver_N15;Liver_N11;Forebrain;HepG2;HeLa_S3;Parietal;Liver_N7;Liver_N6;K562;Liver_T7;Liver_T6;Liver_T11;Liver_N3;GM12878;Liver_N14;Occipital;Cerebellum;Liver_T12;Hs68;Liver_N18;Liver_N17;Liver_T18;Liver_T20;Liver_N19;Liver_N22;Liver_N21;Liver_T21;Liver_T22
Method for Estimation Ribo-;poly(A)-;RNaseR
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 30172046
Aliases circBRAF/hsa_circ_0006460 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr7:140476711-140494267:-
CircRNA type N/A Gene ID ENSG00000133606.10
Gene Name MKRN1 Detection pipeline N/A
Sample Type Gliomas
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer CTCCAGCTTGTATCACCAT
Reverse Primer TCTTCATCTGCTGGTCGGAA
Pubmed 28236760
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
176 GTTGTGGCTTTGTGGAATAGC CGATCCTCATCAGCTCCCAA 47.619 55 58.053 59.245 121 296 21 20
337 CTGTGCAGTCTGTCGTGC TTCCGACCAGCAGATGAAGA 61.111 50 58.762 58.734 8 344 18 20
280 GCAGTCTGTCGTGCAATATCT CTCATCAGCTCCCAATGTGC 47.619 55 58.455 58.977 12 291 21 20
295 GGAGATGGTGATACAAGCTGG CCATTCCAATTCCACAGCCC 52.381 55 58.156 59.174 70 364 21 20
224 GGAATAGCCCATGAAGAGTAGGA AATTCCACAGCCCTTCCGA 47.826 52.632 59.096 58.925 134 357 23 19
182 TGTCGTGTTTTCCTGTACAAAGA CCTTCCGACCAGCAGATGA 39.13 57.895 58.494 59.1 165 346 23 19
179 CATGTCGTGTTTTCCTGTACAA CGACCAGCAGATGAAGATCA 40.909 50 57.195 57.408 163 341 22 20
275 CTGGAGCCCTCACACCAC TTCCAATTCCACAGCCCTTC 66.667 50 59.651 58.077 87 361 18 20
211 GAGCCCTCACACCACTGG AGACCGATCCTCATCAGCTC 66.667 55 59.651 58.673 90 300 18 20
244 AGCCCATGAAGAGTAGGATATTC GTCCGTCTCCTTCAAAATCCATT 43.478 43.478 57.246 58.99 139 382 23 23
325 TGGTCTCAATGATATGGAGATGG CGTCTCCTTCAAAATCCATTCCA 43.478 43.478 57.506 58.99 55 379 23 23
280 GCAGTCTGTCGTGCAATATCT CTCATCAGCTCCCAATGTGC 47.619 55 58.455 58.977 12 291 21 20
176 GTTGTGGCTTTGTGGAATAGC CGATCCTCATCAGCTCCCAA 47.619 55 58.053 59.245 121 296 21 20
295 GGAGATGGTGATACAAGCTGG CCATTCCAATTCCACAGCCC 52.381 55 58.156 59.174 70 364 21 20
211 GAGCCCTCACACCACTGG AGACCGATCCTCATCAGCTC 66.667 55 59.651 58.673 90 300 18 20
182 TGTCGTGTTTTCCTGTACAAAGA CCTTCCGACCAGCAGATGA 39.13 57.895 58.494 59.1 165 346 23 19
224 GGAATAGCCCATGAAGAGTAGGA AATTCCACAGCCCTTCCGA 47.826 52.632 59.096 58.925 134 357 23 19
275 CTGGAGCCCTCACACCAC TTCCAATTCCACAGCCCTTC 66.667 50 59.651 58.077 87 361 18 20
337 CTGTGCAGTCTGTCGTGC TTCCGACCAGCAGATGAAGA 61.111 50 58.762 58.734 8 344 18 20
179 CATGTCGTGTTTTCCTGTACAA CGACCAGCAGATGAAGATCA 40.909 50 57.195 57.408 163 341 22 20
325 TGGTCTCAATGATATGGAGATGG CGTCTCCTTCAAAATCCATTCCA 43.478 43.478 57.506 58.99 55 379 23 23
244 AGCCCATGAAGAGTAGGATATTC GTCCGTCTCCTTCAAAATCCATT 43.478 43.478 57.246 58.99 139 382 23 23