Aliases hsa_circ_0003171 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:141749116-141762415:-
CircRNA type . Gene ID ENSG00000169398.15
Gene Name PTK2 Detection pipeline .
Sample Type Hs68_RNase; Hs68_control; K562; H1hesc; Gm12878; Bj; A549; Sknshra
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25234927
Aliases HSA_CIRCpedia_60222 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:141749116-141762415
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type Liver_T8;SH-SY5Y_D2_exp1;Lung;PA1;H9;SH-SY5Y_D4_exp2;Liver_T7;Stomach;SH-SY5Y_D8_exp2;Liver_T15;Diencephalon;SH-SY5Y_D0_exp2;Liver_N12;Occipital;Liver_T6;Liver_N11;Liver_N13;SH-SY5Y_D0_exp1;AG04450;GM12878;Cerebellum;Temporal;Liver_T12;Liver_N15;Liver_N14;HepG2;K562;Liver_T14;Thyroid;Heart;Liver;Parietal;Liver_N8;Cortex;Forebrain;Liver_T11;Liver_N7;H1;Hs68;Liver_T22;Liver_N18;Liver_N19;Liver_T20;Liver_T19;Liver_N21;Liver_N17;Liver_T21;Liver_T17;Liver_N22
Method for Estimation Ribo-;RNaseR;poly(A)-
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 30172046
Aliases chr8:141749116-141762415 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:141749116-141762415:n/a
CircRNA type n/a Gene ID ENSG00000169398.15
Gene Name PTK2 Detection pipeline UROBORUS
Sample Type gliomas
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 26873924
Aliases hsa_circ_0003171 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:141749116-141762415:-
CircRNA type N/A Gene ID ENSG00000169398.15
Gene Name PTK2 Detection pipeline N/A
Sample Type Primary Great Saphenous Vein Varicosities
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer CCCCAACTTGAATCACACACC
Reverse Primer ACTGAGGCGGAATCCATAGC
Pubmed 29577902
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
314 TGATTGACTCTGGAGCCATC TACTTCGGACAGCGTGAGAG 50 55 57.004 59.197 42 355 20 20
348 ACATCCATACGTCACTAGCTGA CGGACAGCGTGAGAGAGAAA 45.455 55 58.712 59.759 3 350 22 20
318 CGTCGAAAATTGATTGACTCTGG GGACAGCGTGAGAGAGAAATTT 43.478 45.455 58.358 58.67 32 349 23 22
293 CGAAAATTGATTGACTCTGGAGC CTTCAAGAAGCCTGTAAGTGTCT 43.478 43.478 58.344 58.364 35 327 23 23
346 GTCACTAGCTGAGGTAAAACGT CTGTACTTCGGACAGCGTGA 45.455 55 58.089 59.76 13 358 22 20
270 CAAACATCCATACGTCACTAGC TGTGAAATCCAAACTGTCTCTGA 45.455 39.13 57.221 57.965 0 269 22 23
271 GAGCCATCCATTTAATAGGCAAT CAAGAAGCCTGTAAGTGTCTAGA 39.13 43.478 57.01 57.607 54 324 23 23
314 TGATTGACTCTGGAGCCATC TACTTCGGACAGCGTGAGAG 50 55 57.004 59.197 42 355 20 20
348 ACATCCATACGTCACTAGCTGA CGGACAGCGTGAGAGAGAAA 45.455 55 58.712 59.759 3 350 22 20
346 GTCACTAGCTGAGGTAAAACGT CTGTACTTCGGACAGCGTGA 45.455 55 58.089 59.76 13 358 22 20
318 CGTCGAAAATTGATTGACTCTGG GGACAGCGTGAGAGAGAAATTT 43.478 45.455 58.358 58.67 32 349 23 22
271 GAGCCATCCATTTAATAGGCAAT CAAGAAGCCTGTAAGTGTCTAGA 39.13 43.478 57.01 57.607 54 324 23 23
270 CAAACATCCATACGTCACTAGC TGTGAAATCCAAACTGTCTCTGA 45.455 39.13 57.221 57.965 0 269 22 23
293 CGAAAATTGATTGACTCTGGAGC CTTCAAGAAGCCTGTAAGTGTCT 43.478 43.478 58.344 58.364 35 327 23 23