Aliases chr12:57804736-57798617 Scientific name Solanum tuberosum
Organism Potato Genome Locus chr12:57798617-57804736:-
CircRNA type exon Gene ID n/a
Gene Name PGSC0003DMG402029299 Detection pipeline CIRI
Sample Type Stem tissues subjected to Brasiliense Infection
Method for Estimation Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer TCAGCGTATCCTTCAGAGTGGTG
Reverse Primer AGAGCCTCTGGTGGCATAGTG
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
259 TGTCTGCGCAACATGTCAAA CCACCAGAGGCTCTTGAGAT 45 55 58.98 58.798 78 336 20 20
208 TCTTCACGGACACTGGTACC GTGGGTGTTTTCTCTGCCAC 55 55 59.036 59.331 153 360 20 20
207 TACGCTGATCTTCACGGACA TTCTCTGCCACTATGCCACC 50 55 58.83 59.747 145 351 20 20
113 AAAGACACGGCCTGGAGTAC CTTGAAACGGCGTGAAGGTT 55 50 59.679 59.339 95 207 20 20
174 CCAACACACGCATGAACCTT CTGCCACTATGCCACCAGA 50 57.895 59.332 59.396 174 347 20 19
206 TGATCTTCACGGACACTGGT TGTTTTCTCTGCCACTATGCC 50 47.619 58.662 58.564 150 355 20 21
177 AACCTTCACGCCGTTTCAAG CCAAGTGGGTGTTTTCTCTGC 50 52.381 59.339 59.662 188 364 20 21
118 TCAAAGACACGGCCTGGAG AAGCTTGAAACGGCGTGAAG 57.895 50 59.629 59.692 93 210 19 20
103 CCAACCACTACATGAACACCA GAGTGGAAGCTTGAAACGGC 47.619 55 58.143 59.761 114 216 21 20
168 CTTCACGCCGTTTCAAGCTT GGGTGTTTTCTCTGCCACTAT 50 47.619 59.692 57.927 191 358 20 21
111 ACCACTACATGAACACCACTCT TCGATAAGGAAGAGTGGAAGCT 45.455 45.455 59.027 58.634 117 227 22 22
149 CGGGGCGAAGAGACTGTC GGAAGCTTGAAACGGCGTG 66.667 57.895 59.818 60.082 64 212 18 19
100 ACATGAACACCACTCTGAAGG AAGGAAGAGTGGAAGCTTGAA 47.619 42.857 57.868 57.135 123 222 21 21