Aliases chr11:9741794-9720571 Scientific name Solanum tuberosum
Organism Potato Genome Locus chr11:9720571-9741794:-
CircRNA type intergenic Gene ID n/a
Gene Name n/a Detection pipeline CIRI
Sample Type Stem tissues subjected to Brasiliense Infection
Method for Estimation Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer CCGCATTTGGTGAGGACA
Reverse Primer GGAGCAACCCTTTATCCACAG
Pubmed 29280973
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
234 ACCACCAGTTCCTTCCATCA GCTGTGGATAAAGGGTTGCT 50 50 58.555 58.161 118 351 20 20
159 AAATGCGGCCACAACCTTTT TGATCCTAAGACACAGCTGCA 45 47.619 59.532 59.098 94 252 20 21
151 AGATGTCCTCACCAAATGCG GCGGCTCATGATTAGAGATGG 50 52.381 58.257 58.655 81 231 20 21
212 CCTAGCTTTGCACGATCAACT GGTTGATCCTAAGACACAGCT 47.619 47.619 58.649 57.381 44 255 21 21
195 TTTGACCTAGCTTTGCACGA CAGCGGCTCATGATTAGAGA 45 50 57.752 57.191 39 233 20 20
351 GACCTAGCTTTGCACGATCA GCACCATTTATCTCACGTGGT 50 47.619 57.99 58.644 42 392 20 21
309 AGCTTTGCACGATCAACTTCT TGAAGCTGTGGATAAAGGGTT 42.857 42.857 58.502 57.193 47 355 21 21
222 TTGCACGATCAACTTCTCCA CCCATTGTTGTAGTTTGGGTTG 45 45.455 57.458 58.011 51 272 20 22
173 CCACCAGTTCCTTCCATCAAAA GATGGATAAGTGGACTAAACCCA 45.455 43.478 58.77 57.632 119 291 22 23
138 CAAATGCGGCCACAACCT CGGCTCATGATTAGAGATGGATC 55.556 47.826 58.95 58.568 93 230 18 23
274 CACCAAATGCGGCCACAA GGAAGTTTTGAAGCTGTGGATAA 55.556 39.13 59.267 57.294 90 363 18 23
149 ACCAGTTCCTTCCATCAAAATGT ATTGTTGTAGTTTGGGTTGATCC 39.13 39.13 58.517 57.278 121 269 23 23
309 TGCACGATCAACTTCTCCATTA AGTTTTGAAGCTGTGGATAAAGG 40.909 39.13 57.799 57.288 52 360 22 23
145 TCCAATAAGATGTCCTCACCAAA AGAGATGGATCAATGGAGGAATT 39.13 39.13 57.487 57.073 74 218 23 23