Aliases hsa_circ_0041103 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr16:89962397-89967202:+
CircRNA type . Gene ID ENSG00000141002.14
Gene Name TCF25 Detection pipeline .
Sample Type Nhek; K562; Huvec; Hepg2; Helas3; H1hesc; Gm12878; Bj; Ag04450; A549; Sknshra; Mcf7
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25234927
Aliases HSA_CIRCpedia_19216 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr16:89962397-89967202
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type Liver_T14;Liver_N13;Liver_T13;Temporal;Thyroid;H9;HepG2;BJ;HUVEC;Liver_N7;NHEK;Liver_N14;Liver_N11;AG04450;Liver;GM12878;PA1;SH-SY5Y_D0_exp1;Diencephalon;Cortex;Parietal;Occipital;H1;K562;Cerebellum;HeLa_S3;A549;Liver_T12;Hs68;Liver_N19;Liver_N17
Method for Estimation Ribo-;RNaseR;poly(A)-
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 30172046
Aliases hsa_circRNA_101922 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr16:89962397-89967202:+
CircRNA type exonic Gene ID ENSG00000141002.14
Gene Name TCF25 Detection pipeline n/a
Sample Type Esophageal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 27465405
Aliases circTCF25/hsa_circ_0041103 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr16:89962397-89967202:+
CircRNA type N/A Gene ID ENSG00000141002.14
Gene Name TCF25 Detection pipeline N/A
Sample Type Bladder cancer
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer GATACAGCAGGCGCTCACCAT
Reverse Primer TCGGGTCTGCGGTAATCCA
Pubmed 27484176
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
125 AACACAGACAGCCCCAGTTT ACTGGTGAGACTGAACAGGG 50 55 59.741 58.948 131 255 20 20
136 TTACCGTGAACACAGACAGC CCCACTGGTGAGACTGAACA 50 55 58.139 59.241 123 258 20 20
162 TGAACACAGACAGCCCCAG TTCTCGGGTCTGCGGTAATC 57.895 55 59.548 59.541 129 290 19 20
112 GAGCCAAGAGAGCGCTGTA AGCTGCACTCACCTGTTCTC 57.895 55 59.487 59.965 194 305 19 20
132 GCCTCCTTGTCCTCTCGG CGGGTCTGCGGTAATCCAG 66.667 63.158 59.104 60.227 155 286 18 19
131 CACCCCTGTTAGCCCCTG TACAGCGCTCTCTTGGCTC 66.667 57.895 59.323 59.487 82 212 18 19
179 CTCTCGGGACATCGCCAC CGCAGGAGAAGGGAAGGG 66.667 66.667 59.895 59.413 166 344 18 18
104 CCCACGGAGCCAAGAGAG GTTCTCGGGTCTGCGGTA 66.667 61.111 59.419 58.719 188 291 18 18
179 TTTGGCGGCCTCCTTGTC GAGCTGCGTCACCTCCAG 61.111 66.667 60.282 60.126 148 326 18 18
115 CAGTTTGGCGGCCTCCTT CCCCACTGGTGAGACTGA 61.111 61.111 60.282 57.785 145 259 18 18
181 GCGGCCTCCTTGTCCTCT GAAGGGGAGCTGCGTCAC 66.667 66.667 61.395 60.435 152 332 18 18
203 CCCAGCTCCCTAATTTTGCC CCCACTGGTGAGACTGAACA 55 55 58.885 59.241 56 258 20 20
194 CACGCTCTGTTTCTTCGTCC GCTCTCTCTCCAGGGAACAT 55 55 59.215 58.505 13 206 20 20
246 CTCCACGCTCTGTTTCTTCG ACTGGTGAGACTGAACAGGG 55 55 58.936 58.948 10 255 20 20
240 CCTGTCCCAGCTCCCTAATT TTCTCGGGTCTGCGGTAATC 55 55 58.783 59.541 51 290 20 20
128 CACTGGCGTATTTCCTGCTG GTACAGCGCTCTCTCTCCAG 55 60 59.271 59.62 86 213 20 20
187 GGCCTCTCTCCTGATACAGC CAGGAGAAGGGAAGGGGAG 60 63.158 59.321 58.386 156 342 20 19
100 ATGTTCCCTGGAGAGAGAGC CGGGTCTGCGGTAATCCAG 55 63.158 58.505 60.227 187 286 20 19
220 TGCCTTCTCTGTTCCACTGG GTTCTCGGGTCTGCGGTA 55 61.111 59.602 58.719 72 291 20 18
147 GCTCACCATGTTCCCTGGA GAGCTGCGTCACCTCCAG 57.895 66.667 59.315 60.126 180 326 19 18
123 CACCATGTTCCCTGGAGAGA AGCTGCACTCACCTGTTCTC 55 55 58.721 59.965 183 305 20 20
118 GCGTATTTCCTGCTGAGCC GCGCTCTCTCTCCAGGGAA 57.895 63.158 58.982 61.055 91 208 19 19
183 CTCGTAGGCTCATCGGAACC CTGTACAGCGCTCTCTCTC 60 57.895 59.969 57.084 33 215 20 19
202 GAGCCAGCAGACAGACCTC CAGCTGCACTCACCTGTT 63.158 55.556 59.782 57.53 105 306 19 18
140 CCTCCCTGAGTGTGAGCAG CCCCACTGGTGAGACTGA 63.158 61.111 59.404 57.785 120 259 19 18
284 AACCTGTCCCAGCTCCCTA GAAGGGGAGCTGCGTCAC 57.895 66.667 59.526 60.435 49 332 19 18
203 CCCAGCTCCCTAATTTTGCC CCCACTGGTGAGACTGAACA 55 55 58.885 59.241 56 258 20 20
194 CACGCTCTGTTTCTTCGTCC GCTCTCTCTCCAGGGAACAT 55 55 59.215 58.505 13 206 20 20
240 CCTGTCCCAGCTCCCTAATT TTCTCGGGTCTGCGGTAATC 55 55 58.783 59.541 51 290 20 20
246 CTCCACGCTCTGTTTCTTCG ACTGGTGAGACTGAACAGGG 55 55 58.936 58.948 10 255 20 20
128 CACTGGCGTATTTCCTGCTG GTACAGCGCTCTCTCTCCAG 55 60 59.271 59.62 86 213 20 20
100 ATGTTCCCTGGAGAGAGAGC CGGGTCTGCGGTAATCCAG 55 63.158 58.505 60.227 187 286 20 19
187 GGCCTCTCTCCTGATACAGC CAGGAGAAGGGAAGGGGAG 60 63.158 59.321 58.386 156 342 20 19
123 CACCATGTTCCCTGGAGAGA AGCTGCACTCACCTGTTCTC 55 55 58.721 59.965 183 305 20 20
220 TGCCTTCTCTGTTCCACTGG GTTCTCGGGTCTGCGGTA 55 61.111 59.602 58.719 72 291 20 18
118 GCGTATTTCCTGCTGAGCC GCGCTCTCTCTCCAGGGAA 57.895 63.158 58.982 61.055 91 208 19 19
183 CTCGTAGGCTCATCGGAACC CTGTACAGCGCTCTCTCTC 60 57.895 59.969 57.084 33 215 20 19
147 GCTCACCATGTTCCCTGGA GAGCTGCGTCACCTCCAG 57.895 66.667 59.315 60.126 180 326 19 18
140 CCTCCCTGAGTGTGAGCAG CCCCACTGGTGAGACTGA 63.158 61.111 59.404 57.785 120 259 19 18
202 GAGCCAGCAGACAGACCTC CAGCTGCACTCACCTGTT 63.158 55.556 59.782 57.53 105 306 19 18
284 AACCTGTCCCAGCTCCCTA GAAGGGGAGCTGCGTCAC 57.895 66.667 59.526 60.435 49 332 19 18
203 CCCAGCTCCCTAATTTTGCC CCCACTGGTGAGACTGAACA 55 55 58.885 59.241 56 258 20 20
246 CTCCACGCTCTGTTTCTTCG ACTGGTGAGACTGAACAGGG 55 55 58.936 58.948 10 255 20 20
194 CACGCTCTGTTTCTTCGTCC GCTCTCTCTCCAGGGAACAT 55 55 59.215 58.505 13 206 20 20
240 CCTGTCCCAGCTCCCTAATT TTCTCGGGTCTGCGGTAATC 55 55 58.783 59.541 51 290 20 20
128 CACTGGCGTATTTCCTGCTG GTACAGCGCTCTCTCTCCAG 55 60 59.271 59.62 86 213 20 20
123 CACCATGTTCCCTGGAGAGA AGCTGCACTCACCTGTTCTC 55 55 58.721 59.965 183 305 20 20
187 GGCCTCTCTCCTGATACAGC CAGGAGAAGGGAAGGGGAG 60 63.158 59.321 58.386 156 342 20 19
100 ATGTTCCCTGGAGAGAGAGC CGGGTCTGCGGTAATCCAG 55 63.158 58.505 60.227 187 286 20 19
220 TGCCTTCTCTGTTCCACTGG GTTCTCGGGTCTGCGGTA 55 61.111 59.602 58.719 72 291 20 18
118 GCGTATTTCCTGCTGAGCC GCGCTCTCTCTCCAGGGAA 57.895 63.158 58.982 61.055 91 208 19 19
183 CTCGTAGGCTCATCGGAACC CTGTACAGCGCTCTCTCTC 60 57.895 59.969 57.084 33 215 20 19
147 GCTCACCATGTTCCCTGGA GAGCTGCGTCACCTCCAG 57.895 66.667 59.315 60.126 180 326 19 18
140 CCTCCCTGAGTGTGAGCAG CCCCACTGGTGAGACTGA 63.158 61.111 59.404 57.785 120 259 19 18
284 AACCTGTCCCAGCTCCCTA GAAGGGGAGCTGCGTCAC 57.895 66.667 59.526 60.435 49 332 19 18
202 GAGCCAGCAGACAGACCTC CAGCTGCACTCACCTGTT 63.158 55.556 59.782 57.53 105 306 19 18