Aliases hsa_circ_0005397 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr17:30500849-30503232:+
CircRNA type . Gene ID ENSG00000126858.12
Gene Name RHOT1 Detection pipeline .
Sample Type Hs68_RNase; Hs68_control; Nhek; K562; Huvec; Helas3; H1hesc; Gm12878; Bj; Ag04450; A549; Sknshra
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25234927
Aliases HSA_CIRCpedia_20144 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr17:30500849-30503232
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type K562;Liver_N14;Occipital;Cerebellum;HeLa_S3;Liver_T12;Parietal;Liver_T13;Liver;H1;A549;Liver_N8;GM12878;Liver_N12;Liver_N10;Liver_T3;Temporal;NHEK;Diencephalon;SH-SY5Y_D0_exp1;Stomach;Liver_N13;Lung;SH-SY5Y_D0_exp2;Liver_N15;Liver_N6;BJ;AG04450;Heart;Forebrain;Liver_N7;H9;Thyroid;PA1;Liver_T8;Cortex;Hs68;Liver_T20;Liver_N21;Liver_N20;Liver_T21;Liver_T18;Liver_T17;Liver_N19;Liver_N18;Liver_N22;Liver_T19;Liver_T22;Liver_N17
Method for Estimation poly(A)-;Ribo-;RNaseR
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 30172046
Aliases hsa_circRNA_102034 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr17:30500849-30503232:+
CircRNA type exonic Gene ID ENSG00000126858.12
Gene Name RHOT1 Detection pipeline n/a
Sample Type Esophageal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 27465405
Aliases hsa_circ_0005397 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr17:30500849-30503232:+
CircRNA type N/A Gene ID ENSG00000126858.12
Gene Name RHOT1 Detection pipeline N/A
Sample Type Pancreatic Ductal Adenocarcinoma
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer GTCATCTGTATAGTGTATGCCGTTA
Reverse Primer CAGCTGGAATGGTGATTTCTT
Pubmed 27997903
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
231 GTTGGTTTCAGTGGAGTGCT GGAACTCTCTCTGGGGTGAC 50 60 58.32 59.101 28 258 20 20
105 ACAAGTCGATGGATTCCTCTCA CTCTCTCTGGGGTGACATCA 45.455 55 58.9 58.142 150 254 22 20
150 GGGTCTAAGGGAAGAGTGTTTTG ATGGTGATTTCTTCTGCCCG 47.826 50 58.927 58.245 79 228 23 20
185 GGGGTCTAAGGGAAGAGTGT TGTTGGAACTCTCTCTGGGG 55 55 58.046 58.648 78 262 20 20
224 TCCCTATAGTTGGTTTCAGTGGA GTGACATCAGCTGGAATGGT 43.478 50 58.569 57.88 20 243 23 20
203 CAAAGACAGCAGGTTCCTCC CTACAGAGAAAAGACCACCTCTC 55 47.826 58.472 57.933 188 390 20 23
166 GAGTGCTTCCAAAGTTGATTCTC GAGGAACCTGCTGTCTTTGT 43.478 50 57.959 57.738 41 206 23 20
121 GGTAACAAGTCGATGGATTCCTC TGTGTGTTGGAACTCTCTCTG 47.826 47.619 58.879 57.541 146 266 23 21
231 GTTGGTTTCAGTGGAGTGCT GGAACTCTCTCTGGGGTGAC 50 60 58.32 59.101 28 258 20 20
185 GGGGTCTAAGGGAAGAGTGT TGTTGGAACTCTCTCTGGGG 55 55 58.046 58.648 78 262 20 20
105 ACAAGTCGATGGATTCCTCTCA CTCTCTCTGGGGTGACATCA 45.455 55 58.9 58.142 150 254 22 20
150 GGGTCTAAGGGAAGAGTGTTTTG ATGGTGATTTCTTCTGCCCG 47.826 50 58.927 58.245 79 228 23 20
224 TCCCTATAGTTGGTTTCAGTGGA GTGACATCAGCTGGAATGGT 43.478 50 58.569 57.88 20 243 23 20
166 GAGTGCTTCCAAAGTTGATTCTC GAGGAACCTGCTGTCTTTGT 43.478 50 57.959 57.738 41 206 23 20
203 CAAAGACAGCAGGTTCCTCC CTACAGAGAAAAGACCACCTCTC 55 47.826 58.472 57.933 188 390 20 23
121 GGTAACAAGTCGATGGATTCCTC TGTGTGTTGGAACTCTCTCTG 47.826 47.619 58.879 57.541 146 266 23 21
231 GTTGGTTTCAGTGGAGTGCT GGAACTCTCTCTGGGGTGAC 50 60 58.32 59.101 28 258 20 20
185 GGGGTCTAAGGGAAGAGTGT TGTTGGAACTCTCTCTGGGG 55 55 58.046 58.648 78 262 20 20
105 ACAAGTCGATGGATTCCTCTCA CTCTCTCTGGGGTGACATCA 45.455 55 58.9 58.142 150 254 22 20
224 TCCCTATAGTTGGTTTCAGTGGA GTGACATCAGCTGGAATGGT 43.478 50 58.569 57.88 20 243 23 20
150 GGGTCTAAGGGAAGAGTGTTTTG ATGGTGATTTCTTCTGCCCG 47.826 50 58.927 58.245 79 228 23 20
121 GGTAACAAGTCGATGGATTCCTC TGTGTGTTGGAACTCTCTCTG 47.826 47.619 58.879 57.541 146 266 23 21
166 GAGTGCTTCCAAAGTTGATTCTC GAGGAACCTGCTGTCTTTGT 43.478 50 57.959 57.738 41 206 23 20
203 CAAAGACAGCAGGTTCCTCC CTACAGAGAAAAGACCACCTCTC 55 47.826 58.472 57.933 188 390 20 23
231 GTTGGTTTCAGTGGAGTGCT GGAACTCTCTCTGGGGTGAC 50 60 58.32 59.101 28 258 20 20
105 ACAAGTCGATGGATTCCTCTCA CTCTCTCTGGGGTGACATCA 45.455 55 58.9 58.142 150 254 22 20
185 GGGGTCTAAGGGAAGAGTGT TGTTGGAACTCTCTCTGGGG 55 55 58.046 58.648 78 262 20 20
224 TCCCTATAGTTGGTTTCAGTGGA GTGACATCAGCTGGAATGGT 43.478 50 58.569 57.88 20 243 23 20
203 CAAAGACAGCAGGTTCCTCC CTACAGAGAAAAGACCACCTCTC 55 47.826 58.472 57.933 188 390 20 23
150 GGGTCTAAGGGAAGAGTGTTTTG ATGGTGATTTCTTCTGCCCG 47.826 50 58.927 58.245 79 228 23 20
166 GAGTGCTTCCAAAGTTGATTCTC GAGGAACCTGCTGTCTTTGT 43.478 50 57.959 57.738 41 206 23 20
121 GGTAACAAGTCGATGGATTCCTC TGTGTGTTGGAACTCTCTCTG 47.826 47.619 58.879 57.541 146 266 23 21