Aliases chr17:60061531|60062451 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr17:60061531-60062451:n/a
CircRNA type n/a Gene ID ENSG00000108510.5
Gene Name MED13 Detection pipeline n/a
Sample Type Breast cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 29221160
Aliases hsa_circ_0002220 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr17:60061531-60062451:-
CircRNA type . Gene ID ENSG00000108510.5
Gene Name MED13 Detection pipeline .
Sample Type Hs68_RNase; Hs68_control
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25234927
Aliases HSA_CIRCpedia_21867 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr17:60061531-60062451
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type Forebrain;Liver_T7;Occipital;SH-SY5Y_D4_exp1;Liver_N15;Liver_T14;Liver_T10;Liver_T15;Liver_N13;K562;Liver_T13;Parietal;Liver_T8;Liver_T6;GM12878;PA1;Liver_N11;Liver;SH-SY5Y_D0_exp1;Cerebellum;Liver_N14;Lung;Liver_N8;Liver_N7;Temporal;SH-SY5Y_D4_exp2;SH-SY5Y_D2_exp1;Heart;Liver_N6;Liver_N10;SH-SY5Y_D8_exp2;Stomach;SH-SY5Y_D0_exp2;Cortex;Diencephalon;H1;A549;H9;Liver_T12;Liver_N12;NHEK;Liver_T3;Liver_N3;Hs68;Liver_T18;Liver_N21;Liver_N22;Liver_N18;Liver_T21;Liver_T20;Liver_N20;Liver_N19;Liver_T22;Liver_T17;Liver_T19;Liver_N17
Method for Estimation Ribo-;poly(A)-;RNaseR
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 30172046
Aliases circ_005140 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr17:60061531-60062451:-
CircRNA type n/a Gene ID ENSG00000108510.5
Gene Name MED13 Detection pipeline Find_circ
Sample Type colorectal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25624062
Aliases circMED13 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr17:60061531-60062451:-
CircRNA type N/A Gene ID ENSG00000108510.5
Gene Name MED13 Detection pipeline N/A
Sample Type breast cancer
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer ATCGGCTACTATCAACAGAACCTC
Reverse Primer GAGTAGGAATGTCTGACTGAGGGA
Pubmed 29221160
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
287 TGAAGGCCCTGAAGAAAGCA AAGCTTCCCTCATCTGTGCT 50 50 59.522 59.01 20 306 20 20
240 AGGCCCTGAAGAAAGCAATT TCTCAACAAAGCTCCCCACT 45 50 57.684 58.86 23 262 20 20
285 GCATTGAAGGCCCTGAAGAA CCCTCATCTGTGCTCGAGAT 50 55 58.451 58.961 16 300 20 20
223 TCTTCTGGCAATTTGATAGGGG CTTCCCTCATCTGTGCTCGA 45.455 55 58.098 59.18 81 303 22 20
189 CGGTAAATACACTCTTCTGGCA ACAAAGCTCCCCACTCCTTT 45.455 50 58.143 59.146 69 257 22 20
190 GCAGATATTGGCTTGGTAGAGT TGTGCTCGAGATAAATTTGCGA 45.455 40.909 57.921 58.742 103 292 22 22
157 GGAACATCCCACTAGAATTTGAC CCTCATCTGTGCTCGAGATAAA 43.478 45.455 57.18 57.687 143 299 23 22
205 TTTAGAGGTGCAAACATGGAAC CTGGACCCGTTATCTTGCATAA 40.909 45.455 57.153 58.196 126 330 22 22
180 TCCAACTCTGACGGTAAATACAC TGGTTTAAACACAGATTCGCCT 43.478 40.909 58.187 58.518 58 237 23 22
255 AGCAATTCCAATTTTCCAACAGT TGCTCGAGATAAATTTGCGAACT 34.783 39.13 57.705 59.067 36 290 23 23
207 ACTCTGACGGTAAATACACTCTT TTTTAATCTCAACAAAGCTCCCC 39.13 39.13 57.021 57.278 62 268 23 23
287 TGAAGGCCCTGAAGAAAGCA AAGCTTCCCTCATCTGTGCT 50 50 59.522 59.01 20 306 20 20
285 GCATTGAAGGCCCTGAAGAA CCCTCATCTGTGCTCGAGAT 50 55 58.451 58.961 16 300 20 20
189 CGGTAAATACACTCTTCTGGCA ACAAAGCTCCCCACTCCTTT 45.455 50 58.143 59.146 69 257 22 20
240 AGGCCCTGAAGAAAGCAATT TCTCAACAAAGCTCCCCACT 45 50 57.684 58.86 23 262 20 20
223 TCTTCTGGCAATTTGATAGGGG CTTCCCTCATCTGTGCTCGA 45.455 55 58.098 59.18 81 303 22 20
180 TCCAACTCTGACGGTAAATACAC TGGTTTAAACACAGATTCGCCT 43.478 40.909 58.187 58.518 58 237 23 22
205 TTTAGAGGTGCAAACATGGAAC CTGGACCCGTTATCTTGCATAA 40.909 45.455 57.153 58.196 126 330 22 22
190 GCAGATATTGGCTTGGTAGAGT TGTGCTCGAGATAAATTTGCGA 45.455 40.909 57.921 58.742 103 292 22 22
255 AGCAATTCCAATTTTCCAACAGT TGCTCGAGATAAATTTGCGAACT 34.783 39.13 57.705 59.067 36 290 23 23
207 ACTCTGACGGTAAATACACTCTT TTTTAATCTCAACAAAGCTCCCC 39.13 39.13 57.021 57.278 62 268 23 23
157 GGAACATCCCACTAGAATTTGAC CCTCATCTGTGCTCGAGATAAA 43.478 45.455 57.18 57.687 143 299 23 22
287 TGAAGGCCCTGAAGAAAGCA AAGCTTCCCTCATCTGTGCT 50 50 59.522 59.01 20 306 20 20
285 GCATTGAAGGCCCTGAAGAA CCCTCATCTGTGCTCGAGAT 50 55 58.451 58.961 16 300 20 20
240 AGGCCCTGAAGAAAGCAATT TCTCAACAAAGCTCCCCACT 45 50 57.684 58.86 23 262 20 20
223 TCTTCTGGCAATTTGATAGGGG CTTCCCTCATCTGTGCTCGA 45.455 55 58.098 59.18 81 303 22 20
189 CGGTAAATACACTCTTCTGGCA ACAAAGCTCCCCACTCCTTT 45.455 50 58.143 59.146 69 257 22 20
190 GCAGATATTGGCTTGGTAGAGT TGTGCTCGAGATAAATTTGCGA 45.455 40.909 57.921 58.742 103 292 22 22
180 TCCAACTCTGACGGTAAATACAC TGGTTTAAACACAGATTCGCCT 43.478 40.909 58.187 58.518 58 237 23 22
205 TTTAGAGGTGCAAACATGGAAC CTGGACCCGTTATCTTGCATAA 40.909 45.455 57.153 58.196 126 330 22 22
255 AGCAATTCCAATTTTCCAACAGT TGCTCGAGATAAATTTGCGAACT 34.783 39.13 57.705 59.067 36 290 23 23
157 GGAACATCCCACTAGAATTTGAC CCTCATCTGTGCTCGAGATAAA 43.478 45.455 57.18 57.687 143 299 23 22
207 ACTCTGACGGTAAATACACTCTT TTTTAATCTCAACAAAGCTCCCC 39.13 39.13 57.021 57.278 62 268 23 23
285 GCATTGAAGGCCCTGAAGAA CCCTCATCTGTGCTCGAGAT 50 55 58.451 58.961 16 300 20 20
240 AGGCCCTGAAGAAAGCAATT TCTCAACAAAGCTCCCCACT 45 50 57.684 58.86 23 262 20 20
287 TGAAGGCCCTGAAGAAAGCA AAGCTTCCCTCATCTGTGCT 50 50 59.522 59.01 20 306 20 20
189 CGGTAAATACACTCTTCTGGCA ACAAAGCTCCCCACTCCTTT 45.455 50 58.143 59.146 69 257 22 20
223 TCTTCTGGCAATTTGATAGGGG CTTCCCTCATCTGTGCTCGA 45.455 55 58.098 59.18 81 303 22 20
205 TTTAGAGGTGCAAACATGGAAC CTGGACCCGTTATCTTGCATAA 40.909 45.455 57.153 58.196 126 330 22 22
190 GCAGATATTGGCTTGGTAGAGT TGTGCTCGAGATAAATTTGCGA 45.455 40.909 57.921 58.742 103 292 22 22
157 GGAACATCCCACTAGAATTTGAC CCTCATCTGTGCTCGAGATAAA 43.478 45.455 57.18 57.687 143 299 23 22
207 ACTCTGACGGTAAATACACTCTT TTTTAATCTCAACAAAGCTCCCC 39.13 39.13 57.021 57.278 62 268 23 23
180 TCCAACTCTGACGGTAAATACAC TGGTTTAAACACAGATTCGCCT 43.478 40.909 58.187 58.518 58 237 23 22
255 AGCAATTCCAATTTTCCAACAGT TGCTCGAGATAAATTTGCGAACT 34.783 39.13 57.705 59.067 36 290 23 23