Aliases hsa_circ_0061893 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr21:45153949-45168961:+
CircRNA type . Gene ID ENSG00000160209.14
Gene Name PDXK Detection pipeline .
Sample Type Hepg2; Helas3; A549
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25234927
Aliases HSA_CIRCpedia_349001 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr21:45153949-45168961
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type HepG2
Method for Estimation poly(A)-
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 30172046
Aliases hsa_circ_0061893 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr21:45153949-45168961:+
CircRNA type N/A Gene ID ENSG00000160209.14
Gene Name PDXK Detection pipeline N/A
Sample Type Irradiated Hepatic Stellate Cell (HSC)
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer GGACCTCCTTCCCGTCTACAA
Reverse Primer GGACAGAGTTCACCGCGT
Pubmed 28774651
Aliases hsa_circ_0061893 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr21:45153949-45168961:+
CircRNA type N/A Gene ID ENSG00000160209.14
Gene Name PDXK Detection pipeline N/A
Sample Type Irradiated Hepatic Stellate Cell (HSC)
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer GGACCTCCTTCCCGTCTACAA
Reverse Primer GGACAGAGTTCACCGCGT
Pubmed 28774651
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
131 CTTTGTTGGCCAGTACGTCC GAGTTCACCGCGTCAATCTC 55 55 59.128 59.007 101 231 20 20
204 CTCCTTTGTTGGCCAGTACG cacacccacAGTCTGCTCTA 55 55 58.843 59.031 98 301 20 20
120 CTGTCTCCTTTGTTGGCCAG TCAAATCCCAAAACTCGGCC 55 50 58.758 58.747 94 213 20 20
100 GACCTCCTTCCCGTCTACAA ACCGCGTCAATCTCAAATCC 55 50 58.446 58.63 126 225 20 20
102 GCAGACATTATCACGCCCAA CCAACGCCTTACCTGTGTG 50 57.895 58.621 58.756 165 266 20 19
130 CTCAGCCTCTCCTCCTGTCT ATCCCAAAACTCGGCCTCAA 60 50 60.033 59.596 80 209 20 20
144 CCTCTCCTCCTGTCTCCTTTG TTCACCGCGTCAATCTCAAA 57.143 45 59.17 58.128 85 228 21 20
107 CCTCCTTCCCGTCTACAAAGA ACAGAGTTCACCGCGTCAAT 52.381 50 58.823 59.966 128 234 21 20
140 GCCTCTCCTCCTGTCTCCT CGCGTCAATCTCAAATCCCAA 63.158 47.619 59.69 59.263 84 223 19 21
109 GGCCGAGTTTTGGGATTTGA tcacacccacAGTCTGCT 50 55.556 58.747 58.03 194 302 20 18
170 CTCACGGTGACTCAGCCT ACTGGACAGAGTTCACCGC 61.111 57.895 58.629 59.632 70 239 18 19
209 GTTTGAGGCCGAGTTTTGGG ACGCCCAGGACTCCAGGT 55 66.667 59.686 62.641 188 396 20 18
180 CTGGCGTGCTTCCCTCAC GGACAGAGTTCACCGCGTC 66.667 63.158 60.744 60.733 57 236 18 19
131 CTTTGTTGGCCAGTACGTCC GAGTTCACCGCGTCAATCTC 55 55 59.128 59.007 101 231 20 20
204 CTCCTTTGTTGGCCAGTACG cacacccacAGTCTGCTCTA 55 55 58.843 59.031 98 301 20 20
100 GACCTCCTTCCCGTCTACAA ACCGCGTCAATCTCAAATCC 55 50 58.446 58.63 126 225 20 20
102 GCAGACATTATCACGCCCAA CCAACGCCTTACCTGTGTG 50 57.895 58.621 58.756 165 266 20 19
120 CTGTCTCCTTTGTTGGCCAG TCAAATCCCAAAACTCGGCC 55 50 58.758 58.747 94 213 20 20
130 CTCAGCCTCTCCTCCTGTCT ATCCCAAAACTCGGCCTCAA 60 50 60.033 59.596 80 209 20 20
144 CCTCTCCTCCTGTCTCCTTTG TTCACCGCGTCAATCTCAAA 57.143 45 59.17 58.128 85 228 21 20
107 CCTCCTTCCCGTCTACAAAGA ACAGAGTTCACCGCGTCAAT 52.381 50 58.823 59.966 128 234 21 20
109 GGCCGAGTTTTGGGATTTGA tcacacccacAGTCTGCT 50 55.556 58.747 58.03 194 302 20 18
140 GCCTCTCCTCCTGTCTCCT CGCGTCAATCTCAAATCCCAA 63.158 47.619 59.69 59.263 84 223 19 21
170 CTCACGGTGACTCAGCCT ACTGGACAGAGTTCACCGC 61.111 57.895 58.629 59.632 70 239 18 19
180 CTGGCGTGCTTCCCTCAC GGACAGAGTTCACCGCGTC 66.667 63.158 60.744 60.733 57 236 18 19
209 GTTTGAGGCCGAGTTTTGGG ACGCCCAGGACTCCAGGT 55 66.667 59.686 62.641 188 396 20 18