Aliases hsa_circ_00054211 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr2:39559057-39564722:n/a
CircRNA type n/a Gene ID ENSG00000011566.10
Gene Name MAP4K3 Detection pipeline n/a
Sample Type multiple system atrophy
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases hsa_circ_0054211 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr2:39559057-39564722:-
CircRNA type . Gene ID ENSG00000011566.10
Gene Name MAP4K3 Detection pipeline .
Sample Type K562; Hepg2; Helas3; H1hesc; Gm12878; Bj; Ag04450; A549; Sknshra
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases HSA_CIRCpedia_41258 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr2:39559057-39564722
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type PA1;SH-SY5Y_D0_exp1;A549;Kidney;SH-SY5Y_D0_exp2;Heart;Liver_N8;AG04450;Liver_N11;Liver_T11;Liver_T12;H9;Lung;Forebrain;SH-SY5Y_D4_exp1;NHEK;Liver_T3;Liver_N7;K562;Liver_N14;HeLa_S3;Liver_T15;Occipital;Liver_T10;HepG2;Cortex;Diencephalon;Liver_N10;Liver_N12;Liver_N13;Liver_T7;Temporal;H1;Liver_T6;Liver_N6;Parietal;Cerebellum;Liver_N15;SH-SY5Y_D2_exp1;BJ;Thyroid;Liver;Liver_T14;SH-SY5Y_D8_exp2;Liver_T8;Hs68;Liver_T19;Liver_N19;Liver_N22;Liver_N18;Liver_N20;Liver_T21;Liver_N17;Liver_T18;Liver_T22;Liver_T20;Liver_T17
Method for Estimation Ribo-;poly(A)-;RNaseR
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases hsa_circRNA_102699 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr2:39559057-39564722:-
CircRNA type exonic Gene ID ENSG00000011566.10
Gene Name MAP4K3 Detection pipeline n/a
Sample Type Esophageal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases MAP4K3/hsa_circ_0054211 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr2:39559057-39564722:-
CircRNA type N/A Gene ID ENSG00000011566.10
Gene Name MAP4K3 Detection pipeline N/A
Sample Type Multiple system atrophy (MSA)
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer GCAAATTGCATATGTTAGCAGAGA
Reverse Primer GGTCCAGTTACAATATGGTG
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
262 CCGTTTGGCAATTGTAGCTG CTGTGCATTACCTGTTCAGCA 50 47.619 58.019 58.846 26 287 20 21
266 CGTTTGGCAATTGTAGCTGTTA ACTTACTGTGCATTACCTGTTCA 40.909 39.13 57.846 58.032 27 292 22 23
274 GCCAATGAAAGACTTCCGTTTG TGCATTACCTGTTCAGCAAAGT 45.455 40.909 58.691 58.778 11 284 22 22
342 GTGCCAATGAAAGACTTCCGT ACTGCAGGTAAATCAAGTGCT 47.619 42.857 59.12 57.854 9 350 21 21
326 GCAATTGTAGCTGTTATCTGTGC AGAGAAACACTGCAGGTAAATCA 43.478 39.13 58.654 58.027 33 358 23 23
249 CTGTGCAGATACTCCAAAATCAG GGCTTTACTTACTGTGCATTACC 43.478 43.478 57.519 57.769 50 298 23 23
326 TTGGCAATTGTAGCTGTTATCTG GAAACACTGCAGGTAAATCAAGT 39.13 39.13 57.434 57.561 30 355 23 23
262 CCGTTTGGCAATTGTAGCTG CTGTGCATTACCTGTTCAGCA 50 47.619 58.019 58.846 26 287 20 21
342 GTGCCAATGAAAGACTTCCGT ACTGCAGGTAAATCAAGTGCT 47.619 42.857 59.12 57.854 9 350 21 21
266 CGTTTGGCAATTGTAGCTGTTA ACTTACTGTGCATTACCTGTTCA 40.909 39.13 57.846 58.032 27 292 22 23
326 GCAATTGTAGCTGTTATCTGTGC AGAGAAACACTGCAGGTAAATCA 43.478 39.13 58.654 58.027 33 358 23 23
274 GCCAATGAAAGACTTCCGTTTG TGCATTACCTGTTCAGCAAAGT 45.455 40.909 58.691 58.778 11 284 22 22
326 TTGGCAATTGTAGCTGTTATCTG GAAACACTGCAGGTAAATCAAGT 39.13 39.13 57.434 57.561 30 355 23 23
249 CTGTGCAGATACTCCAAAATCAG GGCTTTACTTACTGTGCATTACC 43.478 43.478 57.519 57.769 50 298 23 23
342 GTGCCAATGAAAGACTTCCGT ACTGCAGGTAAATCAAGTGCT 47.619 42.857 59.12 57.854 9 350 21 21
262 CCGTTTGGCAATTGTAGCTG CTGTGCATTACCTGTTCAGCA 50 47.619 58.019 58.846 26 287 20 21
274 GCCAATGAAAGACTTCCGTTTG TGCATTACCTGTTCAGCAAAGT 45.455 40.909 58.691 58.778 11 284 22 22
266 CGTTTGGCAATTGTAGCTGTTA ACTTACTGTGCATTACCTGTTCA 40.909 39.13 57.846 58.032 27 292 22 23
249 CTGTGCAGATACTCCAAAATCAG GGCTTTACTTACTGTGCATTACC 43.478 43.478 57.519 57.769 50 298 23 23
326 GCAATTGTAGCTGTTATCTGTGC AGAGAAACACTGCAGGTAAATCA 43.478 39.13 58.654 58.027 33 358 23 23
326 TTGGCAATTGTAGCTGTTATCTG GAAACACTGCAGGTAAATCAAGT 39.13 39.13 57.434 57.561 30 355 23 23