Aliases hsa_circ_0079929 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr7:40027197-40027857:+
CircRNA type . Gene ID ENSG00000065883.15
Gene Name CDK13 Detection pipeline .
Sample Type K562; Huvec; Hepg2; Helas3; H1hesc; Gm12878; Bj; Ag04450; A549; Sknshra
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25234927
Aliases HSA_CIRCpedia_58024 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr7:40027197-40027857
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type HUVEC;SH-SY5Y_D0_exp2;Temporal;SH-SY5Y_D4_exp1;Liver_T14;Kidney;Liver_N14;Diencephalon;Liver_T10;Cortex;Liver_T8;SH-SY5Y_D2_exp1;Liver_T13;Liver_N7;Liver_T3;Thyroid;Heart;Liver_N10;Liver_N15;Liver_T6;Liver_N13;Liver_T15;Liver_T7;H1;SH-SY5Y_D8_exp2;Liver_N3;GM12878;Occipital;SH-SY5Y_D0_exp1;AG04450;HeLa_S3;Liver_T11;Liver_N6;Parietal;Liver_N12;Stomach;BJ;Cerebellum;Liver_N11;A549;Liver_N8;Liver;HepG2;K562;SH-SY5Y_D4_exp2;NHEK;Liver_T12;Hs68;Liver_T21;Liver_T17;Liver_N18;Liver_T19;Liver_N20;Liver_T20;Liver_N22;Liver_N19;Liver_N17;Liver_T22;Liver_N21
Method for Estimation poly(A)-;Ribo-;RNaseR
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 30172046
Aliases circ_002066 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr7:40027197-40027857:+
CircRNA type n/a Gene ID ENSG00000065883.15
Gene Name CDK13 Detection pipeline Find_circ
Sample Type colorectal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25624062
Aliases hsa_circRNA_104349 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr7:40027197-40027857:+
CircRNA type exonic Gene ID ENSG00000065883.15
Gene Name CDK13 Detection pipeline n/a
Sample Type Esophageal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 27465405
Aliases hsa_circRNA_104349/hsa_circ_0079929 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr7:40027197-40027857:+
CircRNA type N/A Gene ID ENSG00000065883.15
Gene Name CDK13 Detection pipeline N/A
Sample Type Thoracic Aortic Dissection
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer CCTGCTACGAGATCTTGAATGC
Reverse Primer ACCAAGCATAGGAGCCAAGG
Pubmed 29137225
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
198 TACCACCGTTACCTTTGCCT AGGCCTTATTGTGACCACGA 50 50 58.942 59.019 148 345 20 20
206 CGTTACCTTTGCCTCCCATG GTTGTTTTGGGTTCAGGCCT 55 50 58.905 58.88 154 359 20 20
265 GAGCCAAGGAGAAGGAGCAA ACGAATCGGTTGTTTTGGGT 55 45 59.674 58.317 103 367 20 20
196 TCCCATGCTGCCTGAAGATA TCGGTTGTTTTGGGTTCAGG 50 50 58.49 58.605 167 362 20 20
247 CCAAGGAGAAGGAGCAACATG TGGGTTCAGGCCTTATTGTG 52.381 50 58.91 57.786 106 352 21 20
194 TACCTTTGCCTCCCATGCTG GGTTCAGGCCTTATTGTGACC 55 52.381 60.034 58.908 157 350 20 21
237 TAGGAGCCAAGGAGAAGGAG TGTGACCACGATGATTTTGGA 55 42.857 57.833 57.867 100 336 20 21
271 GGAGAAGGAGCAACATGTAGC TCTATCTCCAGAAACGAATCGGT 52.381 43.478 58.716 59.048 110 380 21 23
261 GCATAGGAGCCAAGGAGAAG TGTTTTGGGTTCAGGCCTTAT 55 42.857 57.747 57.747 97 357 20 21
120 ACCGTTACCTTTGCCTCCC AGGAGAAATGAGTGCTGAAAAGT 57.895 39.13 59.622 58.277 152 271 19 23
101 TCACCTCTACATTACCACCGT TGCTCAATACATTTTGGGATGGT 47.619 39.13 58.189 58.648 136 236 21 23
164 TGCTGCCTGAAGATAAAGAAGC GTGACCACGATGATTTTGGAATT 45.455 39.13 58.987 57.941 172 335 22 23
232 CCTCCCATGCTGCCTGAA AGCCAAATGAGCTAGTTCTATCT 61.111 39.13 59.321 57.115 165 396 18 23
123 GCAACATGTAGCTTTAGTCACCT CCTACTGCTCAATACATTTTGGG 43.478 43.478 58.996 57.495 119 241 23 23
127 TACCACCGTTACCTTTGCCT GACAATCTGTGCCTGCTACG 50 55 58.942 58.998 148 274 20 20
114 CGTTACCTTTGCCTCCCATG TGTGCCTGCTACGAGATCTT 55 50 58.905 58.814 154 267 20 20
105 TCCCATGCTGCCTGAAGATA AATCTGTGCCTGCTACGAGA 50 50 58.49 58.814 167 271 20 20
109 TACCTTTGCCTCCCATGCTG TGCCTGCTACGAGATCTTGAA 55 47.619 60.034 59.175 157 265 20 21
147 GCATAGGAGCCAAGGAGAAG GCCTAGATGAATACGGGCTTC 55 52.381 57.747 58.31 97 243 20 21
179 TAGGAGCCAAGGAGAAGGAG TCTAGACAATCTGTGCCTGCT 55 47.619 57.833 58.817 100 278 20 21
237 GAGCCAAGGAGAAGGAGCAA CTGCCAGGCTACTCTTCAGA 55 55 59.674 58.81 103 339 20 20
104 CCAAGGAGAAGGAGCAACATG TCCAGACCGTCTATCAGCTTC 52.381 52.381 58.91 58.975 106 209 21 21
136 GGAGAAGGAGCAACATGTAGC ATGCCTAGATGAATACGGGC 52.381 50 58.716 57.23 110 245 21 20
147 TCACCTCTACATTACCACCGT TGGATCTAGACAATCTGTGCCT 47.619 45.455 58.189 58.621 136 282 21 22
101 GAGAAGGAGCAACATGTAGCTTT TTTCCAGACCGTCTATCAGC 43.478 50 58.994 57.038 111 211 23 20
110 ACCGTTACCTTTGCCTCCC TGCTACGAGATCTTGAATGCC 57.895 47.619 59.622 58.174 152 261 19 21
104 GAAGCTGATAGACGGTCTGGA TGACGACTTCTGGATCTAGACA 52.381 45.455 58.975 58.048 189 292 21 22
127 TACCACCGTTACCTTTGCCT GACAATCTGTGCCTGCTACG 50 55 58.942 58.998 148 274 20 20
237 GAGCCAAGGAGAAGGAGCAA CTGCCAGGCTACTCTTCAGA 55 55 59.674 58.81 103 339 20 20
109 TACCTTTGCCTCCCATGCTG TGCCTGCTACGAGATCTTGAA 55 47.619 60.034 59.175 157 265 20 21
104 CCAAGGAGAAGGAGCAACATG TCCAGACCGTCTATCAGCTTC 52.381 52.381 58.91 58.975 106 209 21 21
105 TCCCATGCTGCCTGAAGATA AATCTGTGCCTGCTACGAGA 50 50 58.49 58.814 167 271 20 20
114 CGTTACCTTTGCCTCCCATG TGTGCCTGCTACGAGATCTT 55 50 58.905 58.814 154 267 20 20
179 TAGGAGCCAAGGAGAAGGAG TCTAGACAATCTGTGCCTGCT 55 47.619 57.833 58.817 100 278 20 21
147 GCATAGGAGCCAAGGAGAAG GCCTAGATGAATACGGGCTTC 55 52.381 57.747 58.31 97 243 20 21
104 GAAGCTGATAGACGGTCTGGA TGACGACTTCTGGATCTAGACA 52.381 45.455 58.975 58.048 189 292 21 22
136 GGAGAAGGAGCAACATGTAGC ATGCCTAGATGAATACGGGC 52.381 50 58.716 57.23 110 245 21 20
110 ACCGTTACCTTTGCCTCCC TGCTACGAGATCTTGAATGCC 57.895 47.619 59.622 58.174 152 261 19 21
101 GAGAAGGAGCAACATGTAGCTTT TTTCCAGACCGTCTATCAGC 43.478 50 58.994 57.038 111 211 23 20
147 TCACCTCTACATTACCACCGT TGGATCTAGACAATCTGTGCCT 47.619 45.455 58.189 58.621 136 282 21 22
127 TACCACCGTTACCTTTGCCT GACAATCTGTGCCTGCTACG 50 55 58.942 58.998 148 274 20 20
114 CGTTACCTTTGCCTCCCATG TGTGCCTGCTACGAGATCTT 55 50 58.905 58.814 154 267 20 20
105 TCCCATGCTGCCTGAAGATA AATCTGTGCCTGCTACGAGA 50 50 58.49 58.814 167 271 20 20
237 GAGCCAAGGAGAAGGAGCAA CTGCCAGGCTACTCTTCAGA 55 55 59.674 58.81 103 339 20 20
104 CCAAGGAGAAGGAGCAACATG TCCAGACCGTCTATCAGCTTC 52.381 52.381 58.91 58.975 106 209 21 21
109 TACCTTTGCCTCCCATGCTG TGCCTGCTACGAGATCTTGAA 55 47.619 60.034 59.175 157 265 20 21
179 TAGGAGCCAAGGAGAAGGAG TCTAGACAATCTGTGCCTGCT 55 47.619 57.833 58.817 100 278 20 21
147 GCATAGGAGCCAAGGAGAAG GCCTAGATGAATACGGGCTTC 55 52.381 57.747 58.31 97 243 20 21
136 GGAGAAGGAGCAACATGTAGC ATGCCTAGATGAATACGGGC 52.381 50 58.716 57.23 110 245 21 20
110 ACCGTTACCTTTGCCTCCC TGCTACGAGATCTTGAATGCC 57.895 47.619 59.622 58.174 152 261 19 21
104 GAAGCTGATAGACGGTCTGGA TGACGACTTCTGGATCTAGACA 52.381 45.455 58.975 58.048 189 292 21 22
147 TCACCTCTACATTACCACCGT TGGATCTAGACAATCTGTGCCT 47.619 45.455 58.189 58.621 136 282 21 22
101 GAGAAGGAGCAACATGTAGCTTT TTTCCAGACCGTCTATCAGC 43.478 50 58.994 57.038 111 211 23 20