Aliases hsa_circ_0005273 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:141710989-141716304:-
CircRNA type . Gene ID ENSG00000169398.15
Gene Name PTK2 Detection pipeline .
Sample Type Hs68_RNase; Hs68_control; Nhek; Hepg2; Helas3; H1hesc; Bj; Ag04450; A549; Sknshra
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25234927
Aliases HSA_CIRCpedia_60203 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:141710989-141716304
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type H9;Parietal;Liver_N15;Liver_T15;Diencephalon;Heart;PA1;Liver_N11;Liver_N8;Temporal;Liver_T8;A549;Cerebellum;NHEK;Lung;HeLa_S3;Forebrain;BJ;Liver_T11;Cortex;Liver_T3;Liver_N14;Liver_T12;Liver_T14;Liver_T7;SH-SY5Y_D4_exp1;Liver;AG04450;Liver_N12;K562;H1;Thyroid;Stomach;SH-SY5Y_D0_exp1;Occipital;Hs68;Liver_T18;Liver_N21;Liver_N22;Liver_N20;Liver_T20;Liver_T19;Liver_N17;Liver_N18;Liver_T22;Liver_T21;Liver_N19;Liver_T17
Method for Estimation Ribo-;RNaseR;poly(A)-
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 30172046
Aliases circ_005484 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:141710989-141716304:-
CircRNA type n/a Gene ID ENSG00000169398.15
Gene Name PTK2 Detection pipeline Find_circ
Sample Type colorectal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25624062
Aliases hsa_circRNA_104700 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:141710989-141716304:-
CircRNA type exonic Gene ID ENSG00000169398.15
Gene Name PTK2 Detection pipeline n/a
Sample Type Esophageal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 27465405
Aliases circPTK2/hsa_circ_0005273 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:141710989-141716304:-
CircRNA type N/A Gene ID ENSG00000169398.15
Gene Name PTK2 Detection pipeline N/A
Sample Type Bladder cancer
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer TATTGGACCTGCGAGGGATT
Reverse Primer TGTGAACCAGGGTAGCCAGAA
Pubmed 27484176
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
146 CTCTGGTGTGAATGGTCTGC GGGGTAGAGCGGTACATTGT 55 55 58.553 59.171 114 259 20 20
105 TCTCAGGAATGGATGTTGGGT TTTTGGGGTAGAGCGGTACA 47.619 50 58.722 58.65 159 263 21 20
189 GCCCTGTATACGTTTGAACCC ATTTGGCCGCTTAACTTGCA 52.381 45 58.988 59.035 20 208 21 20
146 TTCCTCTGGTGTGAATGGTC GTAGAGCGGTACATTGTGCA 50 50 57.141 57.995 111 256 20 20
188 GCAAGTTAAGCGGCCAAATC GTCCGAGGTCCAGCGAAG 50 66.667 58.371 59.818 190 377 20 18
158 GATGTTGGGTCCAGAGCTGT ACCAATCATTACCAGGTATGCC 55 45.455 59.674 58.167 170 327 20 22
112 AGACATTTCCTCTGGTGTGAATG TGAGTATGATTTGGCCGCTT 43.478 45 58.67 57.582 105 216 23 20
164 TTTAGACATTTCCTCTGGTGTGA GCTTTTGGGGTAGAGCGGT 39.13 57.895 57.439 60.003 102 265 23 19
170 CAACACTTGCCCAATCCCTC GGGGTAGAGCGGTACATTGT 55 55 59.109 59.171 90 259 20 20
158 CCTCGCAGGTCCAATACTGT TTTTGGGGTAGAGCGGTACA 55 50 59.463 58.65 106 263 20 20
216 CCATTTCCTGTTGCTGTCGG GTAGAGCGGTACATTGTGCA 55 50 59.477 57.995 41 256 20 20
147 TCGCAGGTCCAATACTGTAGA AGAGCGGTACATTGTGCATAT 47.619 42.857 58.27 57.524 108 254 21 21
209 TCGGATTAGACGCTCTTCCA GCTTTTGGGGTAGAGCGGT 50 57.895 58.241 60.003 57 265 20 19
222 TCCTGTTGCTGTCGGATTAGA GCGCTTTTGGGGTAGAGC 47.619 61.111 58.824 58.812 46 267 21 18
139 ACCTTGTTTTACGGCCAAATCA ACCAATCATTACCAGGTATGCC 40.909 45.455 59.04 58.167 189 327 22 22
188 GCCAGCGCTGATCTTCTTC TGATTTGGCCGTAAAACAAGGT 57.895 40.909 58.987 59.04 23 210 19 22
120 GGAAGAAGGGTTGAAAACAGCA GAGCGGTACATTGTGCATATTTT 45.455 39.13 59.307 58.08 134 253 22 23
120 TTGCCCAATCCCTCGCAG GAGTATGATTTGGCCGTAAAACA 61.111 39.13 60.045 57.445 96 215 18 23
170 CAACACTTGCCCAATCCCTC GGGGTAGAGCGGTACATTGT 55 55 59.109 59.171 90 259 20 20
216 CCATTTCCTGTTGCTGTCGG GTAGAGCGGTACATTGTGCA 55 50 59.477 57.995 41 256 20 20
209 TCGGATTAGACGCTCTTCCA GCTTTTGGGGTAGAGCGGT 50 57.895 58.241 60.003 57 265 20 19
158 CCTCGCAGGTCCAATACTGT TTTTGGGGTAGAGCGGTACA 55 50 59.463 58.65 106 263 20 20
188 GCCAGCGCTGATCTTCTTC TGATTTGGCCGTAAAACAAGGT 57.895 40.909 58.987 59.04 23 210 19 22
222 TCCTGTTGCTGTCGGATTAGA GCGCTTTTGGGGTAGAGC 47.619 61.111 58.824 58.812 46 267 21 18
139 ACCTTGTTTTACGGCCAAATCA ACCAATCATTACCAGGTATGCC 40.909 45.455 59.04 58.167 189 327 22 22
120 GGAAGAAGGGTTGAAAACAGCA GAGCGGTACATTGTGCATATTTT 45.455 39.13 59.307 58.08 134 253 22 23
147 TCGCAGGTCCAATACTGTAGA AGAGCGGTACATTGTGCATAT 47.619 42.857 58.27 57.524 108 254 21 21
120 TTGCCCAATCCCTCGCAG GAGTATGATTTGGCCGTAAAACA 61.111 39.13 60.045 57.445 96 215 18 23
170 CAACACTTGCCCAATCCCTC GGGGTAGAGCGGTACATTGT 55 55 59.109 59.171 90 259 20 20
158 CCTCGCAGGTCCAATACTGT TTTTGGGGTAGAGCGGTACA 55 50 59.463 58.65 106 263 20 20
188 GCCAGCGCTGATCTTCTTC TGATTTGGCCGTAAAACAAGGT 57.895 40.909 58.987 59.04 23 210 19 22
209 TCGGATTAGACGCTCTTCCA GCTTTTGGGGTAGAGCGGT 50 57.895 58.241 60.003 57 265 20 19
147 TCGCAGGTCCAATACTGTAGA AGAGCGGTACATTGTGCATAT 47.619 42.857 58.27 57.524 108 254 21 21
216 CCATTTCCTGTTGCTGTCGG GTAGAGCGGTACATTGTGCA 55 50 59.477 57.995 41 256 20 20
222 TCCTGTTGCTGTCGGATTAGA GCGCTTTTGGGGTAGAGC 47.619 61.111 58.824 58.812 46 267 21 18
120 GGAAGAAGGGTTGAAAACAGCA GAGCGGTACATTGTGCATATTTT 45.455 39.13 59.307 58.08 134 253 22 23
139 ACCTTGTTTTACGGCCAAATCA ACCAATCATTACCAGGTATGCC 40.909 45.455 59.04 58.167 189 327 22 22
120 TTGCCCAATCCCTCGCAG GAGTATGATTTGGCCGTAAAACA 61.111 39.13 60.045 57.445 96 215 18 23