Aliases hsa_circ_0003221 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:141856358-141900868:-
CircRNA type . Gene ID ENSG00000169398.15
Gene Name PTK2 Detection pipeline .
Sample Type Hs68_RNase; Hs68_control; K562; Hsmm; H1hesc; Bj; Ag04450; A549; Sknshra
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25234927
Aliases HSA_CIRCpedia_60273 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:141856358-141900868
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type Liver_N14;Liver_N7;Occipital;AG04450;SH-SY5Y_D0_exp2;SH-SY5Y_D8_exp2;Parietal;Lung;Liver_T15;NHEK;HUVEC;H1;Diencephalon;Liver_T3;Liver_T7;H9;Liver_N10;SH-SY5Y_D4_exp2;PA1;Liver_N3;Liver_N15;Liver_T10;Liver_T11;SH-SY5Y_D2_exp1;Liver_T6;Temporal;Heart;Liver;BJ;Liver_N6;A549;Forebrain;Liver_N11;Thyroid;Liver_T14;K562;Liver_N12;SH-SY5Y_D0_exp1;Liver_N8;HeLa_S3;Liver_N13;Stomach;Liver_T12;Cortex;Cerebellum;Liver_T13;Hs68;Liver_T21;Liver_T22;Liver_N21;Liver_N20;Liver_T20;Liver_N19;Liver_N22;Liver_T17;Liver_N17;Liver_T19;Liver_N18;Liver_T18
Method for Estimation Ribo-;poly(A)-;RNaseR
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 30172046
Aliases circ_002023 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:141856358-141900868:-
CircRNA type n/a Gene ID ENSG00000169398.15
Gene Name PTK2 Detection pipeline Find_circ
Sample Type colorectal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25624062
Aliases hsa_circRNA_104707 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:141856358-141900868:-
CircRNA type exonic Gene ID ENSG00000169398.15
Gene Name PTK2 Detection pipeline n/a
Sample Type Esophageal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 27465405
Aliases hsa_circ_0003221/circPTK2 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:141856358-141900868:-
CircRNA type N/A Gene ID ENSG00000169398.15
Gene Name PTK2 Detection pipeline N/A
Sample Type Bladder cancer
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer ATCATACTGGGAGATGCGGG
Reverse Primer AGTTGGGGTCAAGGTAAGCA
Pubmed 29125888
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
320 CCCGCATCTCCCAGTATGAT TGCTTACCTTGACCCCAACT 55 50 59.02 58.854 40 359 20 20
211 TTTTCTAGTGCATTGCCCCG GCAATAGTGAGCCAACCACC 50 55 58.827 59.189 24 234 20 20
246 GCATCTCCCAGTATGATCGC AACGTTCTCCTGGTGCAATG 55 50 58.28 58.762 43 288 20 20
240 TCTCCCAGTATGATCGCCTA GTTCTCCTGGTGCAATGGAG 50 55 57.028 58.543 46 285 20 20
110 CCAAACGATAATACTGGCCCA TGGGTACTGGTATGGAACGT 47.619 50 58.074 58.059 194 303 21 20
169 TCTCCCAGTATGATCGCCTAAAA TGGGCCAGTATTATCGTTTGG 43.478 47.619 59.035 58.074 46 214 23 21
222 GACTTCTTTTCTAGTGCATTGCC TGAAAGCAATAGTGAGCCAACC 43.478 45.455 58.273 59.18 18 239 23 22
179 CCCCGCATCTCCCAGTAT ACCTGGGCCAGTATTATCGT 61.111 50 58.108 58.197 39 217 18 20
164 TGCACCAAACGATAATACTGGC CCTTGACCCCAACTTGAATCA 45.455 47.619 59.319 58.125 190 353 22 21
211 TTTTCTAGTGCATTGCCCCG GCAATAGTGAGCCAACCACC 50 55 58.827 59.189 24 234 20 20
246 GCATCTCCCAGTATGATCGC AACGTTCTCCTGGTGCAATG 55 50 58.28 58.762 43 288 20 20
320 CCCGCATCTCCCAGTATGAT TGCTTACCTTGACCCCAACT 55 50 59.02 58.854 40 359 20 20
240 TCTCCCAGTATGATCGCCTA GTTCTCCTGGTGCAATGGAG 50 55 57.028 58.543 46 285 20 20
179 CCCCGCATCTCCCAGTAT ACCTGGGCCAGTATTATCGT 61.111 50 58.108 58.197 39 217 18 20
110 CCAAACGATAATACTGGCCCA TGGGTACTGGTATGGAACGT 47.619 50 58.074 58.059 194 303 21 20
164 TGCACCAAACGATAATACTGGC CCTTGACCCCAACTTGAATCA 45.455 47.619 59.319 58.125 190 353 22 21
169 TCTCCCAGTATGATCGCCTAAAA TGGGCCAGTATTATCGTTTGG 43.478 47.619 59.035 58.074 46 214 23 21
222 GACTTCTTTTCTAGTGCATTGCC TGAAAGCAATAGTGAGCCAACC 43.478 45.455 58.273 59.18 18 239 23 22
320 CCCGCATCTCCCAGTATGAT TGCTTACCTTGACCCCAACT 55 50 59.02 58.854 40 359 20 20
211 TTTTCTAGTGCATTGCCCCG GCAATAGTGAGCCAACCACC 50 55 58.827 59.189 24 234 20 20
240 TCTCCCAGTATGATCGCCTA GTTCTCCTGGTGCAATGGAG 50 55 57.028 58.543 46 285 20 20
246 GCATCTCCCAGTATGATCGC AACGTTCTCCTGGTGCAATG 55 50 58.28 58.762 43 288 20 20
110 CCAAACGATAATACTGGCCCA TGGGTACTGGTATGGAACGT 47.619 50 58.074 58.059 194 303 21 20
179 CCCCGCATCTCCCAGTAT ACCTGGGCCAGTATTATCGT 61.111 50 58.108 58.197 39 217 18 20
164 TGCACCAAACGATAATACTGGC CCTTGACCCCAACTTGAATCA 45.455 47.619 59.319 58.125 190 353 22 21
169 TCTCCCAGTATGATCGCCTAAAA TGGGCCAGTATTATCGTTTGG 43.478 47.619 59.035 58.074 46 214 23 21
222 GACTTCTTTTCTAGTGCATTGCC TGAAAGCAATAGTGAGCCAACC 43.478 45.455 58.273 59.18 18 239 23 22
320 CCCGCATCTCCCAGTATGAT TGCTTACCTTGACCCCAACT 55 50 59.02 58.854 40 359 20 20
211 TTTTCTAGTGCATTGCCCCG GCAATAGTGAGCCAACCACC 50 55 58.827 59.189 24 234 20 20
240 TCTCCCAGTATGATCGCCTA GTTCTCCTGGTGCAATGGAG 50 55 57.028 58.543 46 285 20 20
246 GCATCTCCCAGTATGATCGC AACGTTCTCCTGGTGCAATG 55 50 58.28 58.762 43 288 20 20
110 CCAAACGATAATACTGGCCCA TGGGTACTGGTATGGAACGT 47.619 50 58.074 58.059 194 303 21 20
179 CCCCGCATCTCCCAGTAT ACCTGGGCCAGTATTATCGT 61.111 50 58.108 58.197 39 217 18 20
164 TGCACCAAACGATAATACTGGC CCTTGACCCCAACTTGAATCA 45.455 47.619 59.319 58.125 190 353 22 21
169 TCTCCCAGTATGATCGCCTAAAA TGGGCCAGTATTATCGTTTGG 43.478 47.619 59.035 58.074 46 214 23 21
222 GACTTCTTTTCTAGTGCATTGCC TGAAAGCAATAGTGAGCCAACC 43.478 45.455 58.273 59.18 18 239 23 22