Aliases hsa_circ_0005927 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:42259305-42260979:+
CircRNA type . Gene ID ENSG00000078668.9
Gene Name VDAC3 Detection pipeline .
Sample Type Hs68_RNase; Hs68_control; Nhek; K562; Helas3; H1hesc; Gm12878; Bj; Ag04450; A549; Sknshra
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25234927
Aliases HSA_CIRCpedia_61112 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:42259305-42260979
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type SH-SY5Y_D2_exp1;Lung;Liver_T14;SH-SY5Y_D0_exp1;BJ;H9;Heart;Liver;Liver_N11;Liver_N15;Liver_N13;GM12878;Liver_N14;Cortex;Cerebellum;Liver_T10;K562;Liver_T13;Forebrain;Diencephalon;Liver_N6;Parietal;HeLa_S3;Stomach;Liver_N12;Temporal;Liver_T12;PA1;AG04450;Occipital;H1;Thyroid;Liver_N8;HUVEC;Liver_T8;NHEK;Hs68;Liver_T19;Liver_T17;Liver_N19;Liver_N18;Liver_T22;Liver_N17;Liver_T20;Liver_N20;Liver_N21
Method for Estimation Ribo-;poly(A)-;RNaseR
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 30172046
Aliases hsa_circRNA_104600 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:42259305-42260979:+
CircRNA type exonic Gene ID ENSG00000078668.9
Gene Name VDAC3 Detection pipeline n/a
Sample Type Esophageal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 27465405
Aliases hsa_circ_0005927 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr8:42259305-42260979:+
CircRNA type N/A Gene ID ENSG00000078668.9
Gene Name VDAC3 Detection pipeline N/A
Sample Type Gastric cancer
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer TGAATTTGGAGGTTCTATCTACCAG
Reverse Primer CCTTCAATTTCCCACTCTTCTTT
Pubmed 28737829
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
186 AAACAGGAACGATGGCACTG AGGAGGCCTTCAATTTCCCA 50 50 58.762 58.916 43 228 20 20
190 CAGCTGGGAGTAACAACACC CTTCGAAGGCCAACACAGC 55 57.895 58.476 59.424 129 318 20 19
208 TGCTGCTAAGTACATGCTGG AGTTTGGATTTGGCTGTGTCA 50 42.857 57.972 58.335 160 367 20 21
102 TGGACAGCTGGGAGTAACAA GAGGCCTTCAATTTCCCACTC 50 52.381 58.57 58.905 125 226 20 21
323 ACGATGGCACTGAATTTGGAG TGTGACAGTTTGGATTTGGCT 47.619 42.857 58.913 58.335 51 373 21 21
145 TCCATAAACCTTGCTTGGACAG GCCAACACTAAAACAATCCCG 45.455 47.619 58.579 58.059 110 254 22 21
169 GCTGCTAAGTACATGCTGGATT AGCAAGCCACCCTTCGAA 45.455 55.556 58.791 59.164 161 329 22 18
341 GGCACTGAATTTGGAGGTTCTAT TGTAACCCAGGGCGAAATTAT 43.478 42.857 58.727 57.344 56 396 23 21
117 ACATCCATAAACCTTGCTTGGA GCCTTCAATTTCCCACTCTTCT 40.909 45.455 57.954 58.574 107 223 22 22
102 TGGACAGCTGGGAGTAACAA GAGGCCTTCAATTTCCCACTC 50 52.381 58.57 58.905 125 226 20 21
186 AAACAGGAACGATGGCACTG AGGAGGCCTTCAATTTCCCA 50 50 58.762 58.916 43 228 20 20
208 TGCTGCTAAGTACATGCTGG AGTTTGGATTTGGCTGTGTCA 50 42.857 57.972 58.335 160 367 20 21
190 CAGCTGGGAGTAACAACACC CTTCGAAGGCCAACACAGC 55 57.895 58.476 59.424 129 318 20 19
323 ACGATGGCACTGAATTTGGAG TGTGACAGTTTGGATTTGGCT 47.619 42.857 58.913 58.335 51 373 21 21
145 TCCATAAACCTTGCTTGGACAG GCCAACACTAAAACAATCCCG 45.455 47.619 58.579 58.059 110 254 22 21
169 GCTGCTAAGTACATGCTGGATT AGCAAGCCACCCTTCGAA 45.455 55.556 58.791 59.164 161 329 22 18
117 ACATCCATAAACCTTGCTTGGA GCCTTCAATTTCCCACTCTTCT 40.909 45.455 57.954 58.574 107 223 22 22
341 GGCACTGAATTTGGAGGTTCTAT TGTAACCCAGGGCGAAATTAT 43.478 42.857 58.727 57.344 56 396 23 21
102 TGGACAGCTGGGAGTAACAA GAGGCCTTCAATTTCCCACTC 50 52.381 58.57 58.905 125 226 20 21
186 AAACAGGAACGATGGCACTG AGGAGGCCTTCAATTTCCCA 50 50 58.762 58.916 43 228 20 20
190 CAGCTGGGAGTAACAACACC CTTCGAAGGCCAACACAGC 55 57.895 58.476 59.424 129 318 20 19
208 TGCTGCTAAGTACATGCTGG AGTTTGGATTTGGCTGTGTCA 50 42.857 57.972 58.335 160 367 20 21
323 ACGATGGCACTGAATTTGGAG TGTGACAGTTTGGATTTGGCT 47.619 42.857 58.913 58.335 51 373 21 21
145 TCCATAAACCTTGCTTGGACAG GCCAACACTAAAACAATCCCG 45.455 47.619 58.579 58.059 110 254 22 21
117 ACATCCATAAACCTTGCTTGGA GCCTTCAATTTCCCACTCTTCT 40.909 45.455 57.954 58.574 107 223 22 22
169 GCTGCTAAGTACATGCTGGATT AGCAAGCCACCCTTCGAA 45.455 55.556 58.791 59.164 161 329 22 18
341 GGCACTGAATTTGGAGGTTCTAT TGTAACCCAGGGCGAAATTAT 43.478 42.857 58.727 57.344 56 396 23 21