Aliases hsa_circ_0001946 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chrX:139865339-139866824:+
CircRNA type . Gene ID ENSG00000184258.5
Gene Name CDR1 Detection pipeline .
Sample Type HEK293
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25234927
Aliases HSA_CIRCpedia_118407 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chrX:139865339-139866824
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type Liver_N6;SH-SY5Y_D0_exp2;Lung;Liver_T15;H9;Liver_T12;Occipital;Diencephalon;Liver_N12;AG04450;PA1;SK_N_SH;Liver_N8;Liver_N7;Cerebellum;Parietal;Liver_T10;H1;Liver_T6;Liver_T14;Liver;SH-SY5Y_D0_exp1;Forebrain;Liver_T11;Stomach;Liver_N10;SH-SY5Y_D4_exp1;Liver_T13;Heart;Liver_T7;Liver_N3;Liver_N14;Liver_N15;Kidney;BJ;NHEK;Liver_T3;Thyroid;Cortex;A549;SH-SY5Y_D4_exp2;Temporal;Liver_N13;Liver_N11;HUVEC;Liver_T8;Hs68
Method for Estimation Ribo-;poly(A)-;RNaseR
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 30172046
Aliases HSA_CIRCpedia_181495 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chrX:139865339-139866824
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type Liver_T20;Liver_N19;Liver_N20;Liver_T22;Liver_N22;Liver_T21;Liver_N21;Liver_T17;Liver_T19;Liver_N17
Method for Estimation Ribo-
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 30172046
Aliases circ_004277 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chrX:139865339-139866824:+
CircRNA type n/a Gene ID ENSG00000184258.5
Gene Name CDR1 Detection pipeline Find_circ
Sample Type colorectal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25624062
Aliases hsa_circRNA_105055 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chrX:139865339-139866824:+
CircRNA type antisense Gene ID ENSG00000184258.5
Gene Name CDR1 Detection pipeline n/a
Sample Type Esophageal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 27465405
Aliases hsa_circ_0001946 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chrX:139865339-139866824:+
CircRNA type N/A Gene ID ENSG00000184258.5
Gene Name CDR1 Detection pipeline N/A
Sample Type Pancreatic Ductal Adenocarcinoma
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer ACGTCTCCAGTGTGCTGA
Reverse Primer CTTGACACAGGTGCCATC
Pubmed 27997903
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
145 TGAATACTTGAGAGCCAGGC AAGACCCGGAGTTGTTGGAA 50 50 57.301 59.159 103 247 20 20
169 ACCAAGGAAaacaacaacaaca GAAGACCTTGACACAGGTGC 36.364 55 57.391 58.77 62 230 22 20
147 AACCTTGAATACTTGAGAGCCA ACCCGGAGTTGTTGGAAGAC 40.909 55 57.359 59.892 98 244 22 20
103 CCAGGCTCATTATAAGTTTTGGC CACAGGTGCCATCGGAAAC 43.478 57.895 58.063 59.124 117 219 23 19
163 CAAGGAAaacaacaacaacaaca ACCTTGACACAGGTGCCAT 34.783 52.632 57.086 59.154 64 226 23 19
144 GGAAaacaacaacaacaacaaca CATCGGAAACCAATGGAAGCT 34.783 47.619 57.341 58.905 67 210 23 21
205 TCTGCTCGTCTTCCAACATC GAAGACCTTGACACAGGTGC 50 55 57.63 58.77 26 230 20 20
153 CATCTCTGTGTCTTCCAGCA GCCATCGGAAACCCTGGATA 50 55 57.243 59.528 60 212 20 20
107 ACCCAGTCTTCCATCAACTG CGGAAACCCTGGATATTGCAG 50 52.381 57.133 59.05 101 207 20 21
181 CTTCCAACGTCTCCAGTGTG TGTGGATTTTCTGGAAGCTCA 55 42.857 58.498 57.493 136 316 20 21
111 TCAACTGGCTCAATATCCATGTC CTTGACACAGGTGCCATCGG 43.478 60 58.545 61.301 114 224 23 20
220 TTCCAGCATCTCCAGGGC CACAGGTGCCATCGGAAAC 61.111 57.895 58.998 59.124 0 219 18 19
130 ACTGGCTCAATATCCATGTCTTC AGACCCGGAGTTGTTGGA 43.478 55.556 58.288 57.694 117 246 23 18
223 AGCATCTCCAGGGCTTCC ACCTTGACACAGGTGCCAT 61.111 52.632 58.671 59.154 4 226 18 19
205 TCTGCTCGTCTTCCAACATC GAAGACCTTGACACAGGTGC 50 55 57.63 58.77 26 230 20 20
153 CATCTCTGTGTCTTCCAGCA GCCATCGGAAACCCTGGATA 50 55 57.243 59.528 60 212 20 20
107 ACCCAGTCTTCCATCAACTG CGGAAACCCTGGATATTGCAG 50 52.381 57.133 59.05 101 207 20 21
181 CTTCCAACGTCTCCAGTGTG TGTGGATTTTCTGGAAGCTCA 55 42.857 58.498 57.493 136 316 20 21
223 AGCATCTCCAGGGCTTCC ACCTTGACACAGGTGCCAT 61.111 52.632 58.671 59.154 4 226 18 19
220 TTCCAGCATCTCCAGGGC CACAGGTGCCATCGGAAAC 61.111 57.895 58.998 59.124 0 219 18 19
111 TCAACTGGCTCAATATCCATGTC CTTGACACAGGTGCCATCGG 43.478 60 58.545 61.301 114 224 23 20
130 ACTGGCTCAATATCCATGTCTTC AGACCCGGAGTTGTTGGA 43.478 55.556 58.288 57.694 117 246 23 18
205 TCTGCTCGTCTTCCAACATC GAAGACCTTGACACAGGTGC 50 55 57.63 58.77 26 230 20 20
153 CATCTCTGTGTCTTCCAGCA GCCATCGGAAACCCTGGATA 50 55 57.243 59.528 60 212 20 20
181 CTTCCAACGTCTCCAGTGTG TGTGGATTTTCTGGAAGCTCA 55 42.857 58.498 57.493 136 316 20 21
107 ACCCAGTCTTCCATCAACTG CGGAAACCCTGGATATTGCAG 50 52.381 57.133 59.05 101 207 20 21
220 TTCCAGCATCTCCAGGGC CACAGGTGCCATCGGAAAC 61.111 57.895 58.998 59.124 0 219 18 19
223 AGCATCTCCAGGGCTTCC ACCTTGACACAGGTGCCAT 61.111 52.632 58.671 59.154 4 226 18 19
111 TCAACTGGCTCAATATCCATGTC CTTGACACAGGTGCCATCGG 43.478 60 58.545 61.301 114 224 23 20
130 ACTGGCTCAATATCCATGTCTTC AGACCCGGAGTTGTTGGA 43.478 55.556 58.288 57.694 117 246 23 18