Aliases hsa_circ_0000504 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr13:113170753-113181798:-
CircRNA type . Gene ID ENSG00000126216.8
Gene Name TUBGCP3 Detection pipeline .
Sample Type HEK293; cd_19; Hs68_RNase; Hs68_control; Nhek; K562; Huvec; Hepg2; Helas3; H1hesc; Gm12878; Bj; Ag04450; A549; Sknshra; Mcf7
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25234927
Aliases HSA_CIRCpedia_10108 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr13:113170753-113181798
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type GM12878;HepG2;HeLa_S3;HUVEC;Thyroid;SH-SY5Y_D2_exp1;SH-SY5Y_D0_exp1;Liver;Occipital;Diencephalon;Liver_N12;Liver_N8;Liver_N3;Forebrain;PA1;A549;K562;Liver_T12;NHEK;SH-SY5Y_D0_exp2;Parietal;Liver_T11;Temporal;Liver_N15;Stomach;SH-SY5Y_D4_exp2;H9;Liver_T8;Liver_T6;Liver_N10;Liver_N6;Liver_N7;Heart;Liver_T3;Liver_T13;Liver_T7;Cerebellum;SH-SY5Y_D4_exp1;Liver_T10;Lung;BJ;Liver_T14;Liver_T15;Cortex;Liver_N13;Kidney;AG04450;Liver_N11;SH-SY5Y_D8_exp2;Liver_N14;H1;Hs68;Liver_T20;Liver_N19;Liver_T18;Liver_N20;Liver_T19;Liver_T22;Liver_T21;Liver_N21;Liver_N17;Liver_T17;Liver_N18;Liver_N22
Method for Estimation poly(A)-;Ribo-;RNaseR
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 30172046
Aliases circ_006907 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr13:113170753-113181798:-
CircRNA type n/a Gene ID ENSG00000126216.8
Gene Name TUBGCP3 Detection pipeline Find_circ
Sample Type colorectal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 25624062
Aliases hsa_circRNA_101300 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr13:113170753-113181798:-
CircRNA type exonic Gene ID ENSG00000126216.8
Gene Name TUBGCP3 Detection pipeline n/a
Sample Type Esophageal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Pubmed 27465405
Aliases hsa_circ_0000504 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr13:113170753-113181798:-
CircRNA type N/A Gene ID ENSG00000126216.8
Gene Name TUBGCP3 Detection pipeline N/A
Sample Type Colorectal cancer
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer GCAAAGCTCCTGAGAAACAT
Reverse Primer AAAAGGACCTTCCTAGACTGAT
Pubmed 28656150
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
276 TGTGTCCCTTCCGTATGTCA CGATGGATCAGTCTAGGAAGGT 50 50 58.365 58.773 33 308 20 22
333 GCACATGTGTCCCTTCCGTA CTGTGGCACGACAAGTATACT 55 47.619 60.037 57.768 28 360 20 21
332 GTCCCTTCCGTATGTCAGTGA AGATCGACTGTGGCACGA 52.381 55.556 59.177 58.319 36 367 21 18
363 CTGGCATGTTTCTCAGGAGC GACTGTGGCACGACAAGTAT 55 50 58.907 57.92 0 362 20 20
307 ATGTATTCCATCCGCTTCGC ATCGACTGTGGCACGACAA 50 52.632 58.487 59.634 59 365 20 19
184 TCTCGAGTAAACACCTGGGA TGGATCAGTCTAGGAAGGTAGG 50 50 57.702 57.814 122 305 20 22
287 AGTGGCTCATACATTCTCGAGT TGTAGCATCAGATCCAACAGTT 45.455 40.909 58.973 57.442 108 394 22 22
247 CTGGGATAACAGCAGAAGACA TCCAACAGTTAAAACAGATCGAC 47.619 39.13 57.383 57.082 136 382 21 23
307 ATGTATTCCATCCGCTTCGC ATCGACTGTGGCACGACAA 50 52.632 58.487 59.634 59 365 20 19
363 CTGGCATGTTTCTCAGGAGC GACTGTGGCACGACAAGTAT 55 50 58.907 57.92 0 362 20 20
276 TGTGTCCCTTCCGTATGTCA CGATGGATCAGTCTAGGAAGGT 50 50 58.365 58.773 33 308 20 22
333 GCACATGTGTCCCTTCCGTA CTGTGGCACGACAAGTATACT 55 47.619 60.037 57.768 28 360 20 21
184 TCTCGAGTAAACACCTGGGA TGGATCAGTCTAGGAAGGTAGG 50 50 57.702 57.814 122 305 20 22
247 CTGGGATAACAGCAGAAGACA TCCAACAGTTAAAACAGATCGAC 47.619 39.13 57.383 57.082 136 382 21 23
332 GTCCCTTCCGTATGTCAGTGA AGATCGACTGTGGCACGA 52.381 55.556 59.177 58.319 36 367 21 18
287 AGTGGCTCATACATTCTCGAGT TGTAGCATCAGATCCAACAGTT 45.455 40.909 58.973 57.442 108 394 22 22
363 CTGGCATGTTTCTCAGGAGC GACTGTGGCACGACAAGTAT 55 50 58.907 57.92 0 362 20 20
276 TGTGTCCCTTCCGTATGTCA CGATGGATCAGTCTAGGAAGGT 50 50 58.365 58.773 33 308 20 22
333 GCACATGTGTCCCTTCCGTA CTGTGGCACGACAAGTATACT 55 47.619 60.037 57.768 28 360 20 21
307 ATGTATTCCATCCGCTTCGC ATCGACTGTGGCACGACAA 50 52.632 58.487 59.634 59 365 20 19
332 GTCCCTTCCGTATGTCAGTGA AGATCGACTGTGGCACGA 52.381 55.556 59.177 58.319 36 367 21 18
184 TCTCGAGTAAACACCTGGGA TGGATCAGTCTAGGAAGGTAGG 50 50 57.702 57.814 122 305 20 22
247 CTGGGATAACAGCAGAAGACA TCCAACAGTTAAAACAGATCGAC 47.619 39.13 57.383 57.082 136 382 21 23
287 AGTGGCTCATACATTCTCGAGT TGTAGCATCAGATCCAACAGTT 45.455 40.909 58.973 57.442 108 394 22 22
276 TGTGTCCCTTCCGTATGTCA CGATGGATCAGTCTAGGAAGGT 50 50 58.365 58.773 33 308 20 22
307 ATGTATTCCATCCGCTTCGC ATCGACTGTGGCACGACAA 50 52.632 58.487 59.634 59 365 20 19
333 GCACATGTGTCCCTTCCGTA CTGTGGCACGACAAGTATACT 55 47.619 60.037 57.768 28 360 20 21
363 CTGGCATGTTTCTCAGGAGC GACTGTGGCACGACAAGTAT 55 50 58.907 57.92 0 362 20 20
287 AGTGGCTCATACATTCTCGAGT TGTAGCATCAGATCCAACAGTT 45.455 40.909 58.973 57.442 108 394 22 22
247 CTGGGATAACAGCAGAAGACA TCCAACAGTTAAAACAGATCGAC 47.619 39.13 57.383 57.082 136 382 21 23
332 GTCCCTTCCGTATGTCAGTGA AGATCGACTGTGGCACGA 52.381 55.556 59.177 58.319 36 367 21 18
184 TCTCGAGTAAACACCTGGGA TGGATCAGTCTAGGAAGGTAGG 50 50 57.702 57.814 122 305 20 22