Aliases chr13:28748408|28752072 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr13:28748408-28752072:n/a
CircRNA type n/a Gene ID ENSG00000152520.9
Gene Name PAN3 Detection pipeline n/a
Sample Type Breast cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases hsa_circ_0004372 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr13:28748408-28752072:+
CircRNA type . Gene ID ENSG00000152520.9
Gene Name PAN3 Detection pipeline .
Sample Type Hs68_RNase; Hs68_control; Nhek; K562; Hepg2; Helas3; H1hesc; Gm12878; Bj; Ag04450; A549; Sknshra
Method for Estimation RNA-Seq with Rnase R resistance
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases HSA_CIRCpedia_10462 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr13:28748408-28752072
CircRNA type . Gene ID NA
Gene Name NA Detection pipeline .
Sample Type H9;Lung;HeLa_S3;Liver_T13;Liver_T8;Liver_T10;SH-SY5Y_D0_exp1;SH-SY5Y_D4_exp2;BJ;Occipital;Liver_T6;A549;Liver_N8;GM12878;Liver_T15;Forebrain;Heart;PA1;Cortex;Liver_N10;Liver_T7;Liver_N15;SH-SY5Y_D8_exp2;Liver;Cerebellum;Liver_N12;Liver_N6;Liver_T3;Diencephalon;NHEK;H1;Thyroid;Kidney;Parietal;K562;Liver_T12;HepG2;Liver_N3;SH-SY5Y_D4_exp1;Liver_N14;Liver_T14;Liver_T11;Temporal;Liver_N13;Liver_N7;AG04450;Liver_N11;SH-SY5Y_D0_exp2;Stomach;Hs68;Liver_T18;Liver_N22;Liver_N20;Liver_N18;Liver_T22;Liver_T19;Liver_T21;Liver_N17;Liver_N19;Liver_N21;Liver_T17
Method for Estimation Ribo-;poly(A)-;RNaseR
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases circ_007770 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr13:28748408-28752072:+
CircRNA type n/a Gene ID ENSG00000152520.9
Gene Name PAN3 Detection pipeline Find_circ
Sample Type colorectal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases chr13:28748408-28752072 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr13:28748408-28752072:n/a
CircRNA type n/a Gene ID ENSG00000152520.9
Gene Name PAN3 Detection pipeline UROBORUS
Sample Type gliomas
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases hsa_circRNA_101238 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr13:28748408-28752072:+
CircRNA type exonic Gene ID ENSG00000152520.9
Gene Name PAN3 Detection pipeline n/a
Sample Type Esophageal cancer
Method for Estimation .
Circular RNA status Experimented PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer .
Reverse Primer .
Aliases hsa_circRNA_101238/hsa_circ_0004372 Scientific name Homo sapiens (hg19)
Organism Human Genome Locus chr13:28748408-28752072:+
CircRNA type N/A Gene ID ENSG00000152520.9
Gene Name PAN3 Detection pipeline N/A
Sample Type Thoracic Aortic Dissection
Method for Estimation Microarray and Quantitative PCR
Circular RNA status Validated PCR Details Link to the detailed experimental procedure
Primers (Experimented)
Primers (Validated)
Forward Primer CCAATAAAGCTGGTGCTAAAATAGGA
Reverse Primer CTTGTTTAATGACTTTGGTGCCCT
Suggested primers
Product size Left primer Right primer Left GC Right GC Left TM Right TM Left pos Right pos Left size Right size
225 ATGACTTTGGTGCCCTCAAC ACTCTATATGTCCTCTGGCCC 50 52.381 58.379 58.104 162 386 20 21
130 GGTGCCCTCAACATCTCTCA TCTACAGGGCTTCCAAATCCA 55 47.619 59.385 58.725 170 299 20 21
132 TGCCCTCAACATCTCTCAGAG TGTTTCTACAGGGCTTCCAAA 52.381 42.857 59.17 57.414 172 303 21 21
100 TCCTCTAACATCACCTGCTTCA CAGTTAAAGCACCTCCATCCA 45.455 47.619 58.827 57.928 130 229 22 21
142 GGTTACCCAAGTTTTATGTGTGG AAGCACCTCCATCCATTCCT 43.478 50 57.871 58.697 82 223 23 20
241 CATCACCTGCTTCATCCTTGT TGTCCTCTGGCCCTAGAATAAA 47.619 45.455 58.28 58.269 138 378 21 22
108 AGATCCTCTAACATCACCTGCT TGTATCAGTTAAAGCACCTCCA 45.455 40.909 58.348 57.099 127 234 22 22
221 TGTTTAATGACTTTGGTGCCCT TCCTCTGGCCCTAGAATAAACTT 40.909 43.478 58.428 58.628 156 376 22 23
100 ACGTAACTTACCTTTCAGATCCT CATTCCTGGAACTTTCGTCTCT 39.13 45.455 57.003 58.068 111 210 23 22
100 TCCTCTAACATCACCTGCTTCA CAGTTAAAGCACCTCCATCCA 45.455 47.619 58.827 57.928 130 229 22 21
225 ATGACTTTGGTGCCCTCAAC ACTCTATATGTCCTCTGGCCC 50 52.381 58.379 58.104 162 386 20 21
142 GGTTACCCAAGTTTTATGTGTGG AAGCACCTCCATCCATTCCT 43.478 50 57.871 58.697 82 223 23 20
132 TGCCCTCAACATCTCTCAGAG TGTTTCTACAGGGCTTCCAAA 52.381 42.857 59.17 57.414 172 303 21 21
130 GGTGCCCTCAACATCTCTCA TCTACAGGGCTTCCAAATCCA 55 47.619 59.385 58.725 170 299 20 21
221 TGTTTAATGACTTTGGTGCCCT TCCTCTGGCCCTAGAATAAACTT 40.909 43.478 58.428 58.628 156 376 22 23
241 CATCACCTGCTTCATCCTTGT TGTCCTCTGGCCCTAGAATAAA 47.619 45.455 58.28 58.269 138 378 21 22
108 AGATCCTCTAACATCACCTGCT TGTATCAGTTAAAGCACCTCCA 45.455 40.909 58.348 57.099 127 234 22 22
100 ACGTAACTTACCTTTCAGATCCT CATTCCTGGAACTTTCGTCTCT 39.13 45.455 57.003 58.068 111 210 23 22
130 GGTGCCCTCAACATCTCTCA TCTACAGGGCTTCCAAATCCA 55 47.619 59.385 58.725 170 299 20 21
132 TGCCCTCAACATCTCTCAGAG TGTTTCTACAGGGCTTCCAAA 52.381 42.857 59.17 57.414 172 303 21 21
225 ATGACTTTGGTGCCCTCAAC ACTCTATATGTCCTCTGGCCC 50 52.381 58.379 58.104 162 386 20 21
142 GGTTACCCAAGTTTTATGTGTGG AAGCACCTCCATCCATTCCT 43.478 50 57.871 58.697 82 223 23 20
100 TCCTCTAACATCACCTGCTTCA CAGTTAAAGCACCTCCATCCA 45.455 47.619 58.827 57.928 130 229 22 21
241 CATCACCTGCTTCATCCTTGT TGTCCTCTGGCCCTAGAATAAA 47.619 45.455 58.28 58.269 138 378 21 22
221 TGTTTAATGACTTTGGTGCCCT TCCTCTGGCCCTAGAATAAACTT 40.909 43.478 58.428 58.628 156 376 22 23
100 ACGTAACTTACCTTTCAGATCCT CATTCCTGGAACTTTCGTCTCT 39.13 45.455 57.003 58.068 111 210 23 22
108 AGATCCTCTAACATCACCTGCT TGTATCAGTTAAAGCACCTCCA 45.455 40.909 58.348 57.099 127 234 22 22
130 GGTGCCCTCAACATCTCTCA TCTACAGGGCTTCCAAATCCA 55 47.619 59.385 58.725 170 299 20 21
225 ATGACTTTGGTGCCCTCAAC ACTCTATATGTCCTCTGGCCC 50 52.381 58.379 58.104 162 386 20 21
132 TGCCCTCAACATCTCTCAGAG TGTTTCTACAGGGCTTCCAAA 52.381 42.857 59.17 57.414 172 303 21 21
100 TCCTCTAACATCACCTGCTTCA CAGTTAAAGCACCTCCATCCA 45.455 47.619 58.827 57.928 130 229 22 21
241 CATCACCTGCTTCATCCTTGT TGTCCTCTGGCCCTAGAATAAA 47.619 45.455 58.28 58.269 138 378 21 22
142 GGTTACCCAAGTTTTATGTGTGG AAGCACCTCCATCCATTCCT 43.478 50 57.871 58.697 82 223 23 20
221 TGTTTAATGACTTTGGTGCCCT TCCTCTGGCCCTAGAATAAACTT 40.909 43.478 58.428 58.628 156 376 22 23
108 AGATCCTCTAACATCACCTGCT TGTATCAGTTAAAGCACCTCCA 45.455 40.909 58.348 57.099 127 234 22 22
100 ACGTAACTTACCTTTCAGATCCT CATTCCTGGAACTTTCGTCTCT 39.13 45.455 57.003 58.068 111 210 23 22
130 GGTGCCCTCAACATCTCTCA TCTACAGGGCTTCCAAATCCA 55 47.619 59.385 58.725 170 299 20 21
225 ATGACTTTGGTGCCCTCAAC ACTCTATATGTCCTCTGGCCC 50 52.381 58.379 58.104 162 386 20 21
100 TCCTCTAACATCACCTGCTTCA CAGTTAAAGCACCTCCATCCA 45.455 47.619 58.827 57.928 130 229 22 21
132 TGCCCTCAACATCTCTCAGAG TGTTTCTACAGGGCTTCCAAA 52.381 42.857 59.17 57.414 172 303 21 21
221 TGTTTAATGACTTTGGTGCCCT TCCTCTGGCCCTAGAATAAACTT 40.909 43.478 58.428 58.628 156 376 22 23
241 CATCACCTGCTTCATCCTTGT TGTCCTCTGGCCCTAGAATAAA 47.619 45.455 58.28 58.269 138 378 21 22
142 GGTTACCCAAGTTTTATGTGTGG AAGCACCTCCATCCATTCCT 43.478 50 57.871 58.697 82 223 23 20
108 AGATCCTCTAACATCACCTGCT TGTATCAGTTAAAGCACCTCCA 45.455 40.909 58.348 57.099 127 234 22 22
100 ACGTAACTTACCTTTCAGATCCT CATTCCTGGAACTTTCGTCTCT 39.13 45.455 57.003 58.068 111 210 23 22