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The IndiGenomes resource encompasses the genomic data from over 1000 whole genome sequences sequenced from across India as part of the IndiGen programme and represents diverse geographies and ethnicities. The resource provides access to over 55 million genetic variants comprising of single nucleotide variants and indels. The variants are systematically annotated according to the recent Genome Reference Consortium Human Build 38 (GRCh38). Clinically relevant annotations as well as allele frequencies from global populations have also been integrated.

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This resource is intended for purely research purposes. It should not be used for emergencies or medical or professional advice.

This website does not provide any medical or healthcare products, services or advice, and is not for medical emergencies or urgent situations. Information contained on this website is not a substitute for a doctor's medical judgment or advice. We recommend that you discuss your specific, individual health concerns with your doctor or health care professional.
Commercial use of the resource would require licensing. For more information, contact CSIR-IGIB Business Development and Management Group at

Cite this Resource
Jain A., Bhoyar R.C., Pandhare K., Mishra A., Sharma D., Imran M., Senthivel V., Divakar M.K., Rophina M., Jolly B., Batra A., Sharma S., Siwach S., Jadhao AG., Palande NV., Jha GN., Ashrafi N, Mishra PK, Vidhya A. K., Jain S., Dash D., Kumar NS, Vanlallawma A., Sarma RJ, Chhakchhuak L., Kalyanaraman S., Mahadevan R., Kandasamy S., Pabitha B. M., Rajagopal RE., Ezhil Ramya J., Nirmala Devi P., Bajaj A., Gupta V., Mathew S., Goswami S., Mangla M., Prakash S., Joshi K., Meyakumla, Sreedevi S., Gajjar D.,Soraisham R., Yadav R., Devi YS, Gupta A., Mukerji M., Ramalingam S., Binukumar B. K., Scaria V*, Sivasubbu S* (2020)
IndiGenomes: a comprehensive resource of genetic variants from over 1000 Indian genomes.
Nucleic Acids Research, doi: 10.1093/nar/gkaa923. (PMID: 33095885)

Related Resource
The IndiGenomes-HLA resource provides a comprehensive repository of frequency data on the polymorphism of human leukocyte antigens (HLA) prevalent in Indian population.
Variant Number Comparison in Different Datasets
Variant Position
Variant Classification