About FaviCov

FaviCov is a comprehensive resource for functionally relevant SARS-CoV genetic variants. The resource provides a searchable interface for genomic variants and corresponding variant annotations.

The variant positions are based on the SARS-nCoV-2 reference genome (Wuhan-Hu-1 reference genome ; Genbank NC_045512)

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Example Search :
{{key}}   {{z}}

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Gene Position Ref Alt Genomic Variant
{{itemscont.Gene}} {{itemscont.Position}} {{itemscont.Ref}} {{itemscont.Alt}} {{itemscont.Genomic_Variant}}

Cite this Resource
Rophina M, Pandhare K, Mangla M, Shamnath A, Jolly B, Sethi M, Scaria V FaviCoV -a comprehensive manually curated resource for functional genetic variants in SARS-CoV-2 (submitted 2020)

Details of functional InDels and Variants of Concern/Interest are updated

Last Updated : {{data[0].Updated_On}}

Total number of variants compiled : {{data[0].Total_number_of_variants_compiled}}

Number of Genes covered : {{data[0].Number_of_Genes_covered }}

Experimentally Validated Variants : {{data[0].Experimentally_Validated_Variants}}

We sincerely acknowledge the availability of genome sequence data, authors from a range of originating and submitting labs on GISAID for collaborative efforts.

Wuhan-Hu-1, Complete genome (NC_045512.2) was used as reference template for analysis.

GISAID Acknowledgement
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"This database will be updated during the last week of every month"

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The genetic epidemiology of novel and emerging pathogens in India aims to use genomics technologies to provide insights into the genetic structure, evolution and use the information for translational research.
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The COVID-19 Open Research, Data and Resources initiative at the Vinod Scaria Lab at CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB) aims to provide a platform for Open Research on COVID-19 [read more]